Gene detail

Detailed information of PFX34868.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1:947992...957872
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

CTC1

ATGAGTGATTTCCTAACACGCTGCAGGGATTATTACCGGGTTGGATTTACGCAGAATGAAAAGGAATGGTTGCGGACGTTTTATTATGATATAGAAAAATGTATCCGACAAAATGAAAGCGAAGCGGAGTTCGTCGAAGTATGTCTGGCTGTGTTGCATCAGATAAGAGATTTACGCTGTGTCAAGGATACAGAGGATTATCAAGAATGGCTTCCTGTCAGTCAGCAAGTTGTACCACTTGATACACTACTTAGAGAAAGCAGCGATGTTTGTGGAGGTTCTCTCTGTAGTCAATCAGAAGAAGAAAGTTCGATTCCAGAATACAAGCATGCTTGTAAATTGCCTTTTATCCTCTTGGGATATTTGACTTCACAACCCAAGTCTTCCAAATCTGGAAAAGCTTTAGGCACTCTGTACCTAGAGGATAATTTTGCAGCGATTGTTTGTGAGATAATAAATCCCAACAAGGACTACCTTGAGAGACTATTACTCATTCCTCAGTGGAATTATGTTCCCCTGTCATCTTCATCAGCAGTTAGGGAAGATGTAAAGGATAGTAATGGAGGTTACCTTGAGATCATCAGCATAGGCACACCAATTGTAGTTACAAAAACAAGTGAACCTGATGACAATTTCTCCACAAGTTATGTTTTCAGCATCAAAGAGTTTCAGGAACAAGGGAGTTCAACAGTCAACTTGAATATGCAAGGATCCATTTTCACTTTGAGCCCAATTCACAGCATGAGTGTTGGTAAGCCTTTCTTTCTGGTCAAAATTTCCTGTGCTGAGACAAGCCTTACCACTTCCATAGTGATTCAGGGTGAACAGTTTATGTTCTGGCACAATTTCCTTCAAATCAATGAGCATTATGTTTTCCATAACCTAAGAGAGACTACAATGAACAAGGGAACTCAAAATGAAAGAAAGATCCTTGCCACAACGCGTCGATCAGACTTGCGGAAATACCGACCAAGAGGCGTGAAACGAGTTCATGAAGACGAACAGAGAGAGTCAAAGCGCCCAAGAATCTCAAAGGAAAAAGATGAGGTCTTGAATCAGCGTAGAATATTTCCAAGTCATAAAGGCTACTTGAGATGTGCAGGGACCAACCGGGCAGAGGCAACAGTATTACAGCTTGGAAAACCAAAGCTACCGGTCAACATTACCTACACGGGCGTTATTACAAGATGCATCAACCGTGAAGCTGGAGTTTTTGAACTGGACAATAAAATAAGTTTGTACATTAGTCACCAGCCTTCTGCGAATTGTGGTCGCGGTCTGCGTGTTGGGGCACACGTGACTGCTTACAATGTACACTTGTGCAAGAAAGGGAAGAAAACCCTTGGCATGTGCTGCTGCACACAAAGTACAGTGCGGGTGGTAAAGTTCTCACTTCTAGCTTCACCTTGGAAGCCGTTTAACCCATGTGAGAGTCCCTTGGCTTTACTTGGACAGAATCTCACTTTGGCTGATTATGTGGACCTACTCGAGATGTGCCAAAATGTTCTGGATAAATTCTCAGCACTATTCAGGACAAGGCAGCTTGTCGCTTACTCTGTAAAACAGAGCAGAAAAGTAAAAGAAGATTTGGCGAAAGAAAGTGTATTGGAATTGTTGCTTTCCTTCGTAAAATGCAACTCAGTTACTATGAATATTCCATCAAGAAACATCTATGACGAGTTCTTCGAGGTACCGCATGAATGCCACCCAAATCAGACCAGTCCACTGACCTTCCCGTGGCTCCCTACAATCAAAGAGTTCCTTGATGCTGTAAGTCAGATAAGCTGTGATGAGCCTTGGCTGAGTGGACTGCCTGGTCAAACAACTACATTTACACAGGAAGAGTGGACGTACAAAATTTTGAGTCAAGAAAGCTTCAGTCGTCCATTGATTCTGGTTGGTTGTCTCGGTTACTCTTCAAACGCTGGCCAATTGCGCTTACTTGATCAAACGGGAGAAATCAACTGCATGATCGCACCTAAAGACGAAAATCCCACGGAACATGATTGCGCTAAAAACTGCTGTGAGAAAGCTACTATCAAAGAGCAGTGTTCACGATGTCCCTTTTCACAAACCCGGAGTTTGAGTGCAATGATTCAAATTAACAAGTTTGAGGTAGTTGTGGAGAAATTTCACTCTAGAGGTCTTGTTCAGGAAGATTTGGATAGAGATAGAAATCGATTATACGTGCAGTTCTCCTTTGATGATACGGAAATCTTGATTCCTAAACACGAGAGTAAAGTGGAGAAATATTGTACAAAAAGGACAAATAGATTTGAAGCAGGCACAACGGATGCAAACTTAGAAAGAGAGCTCAACGGAAATCTTGAAAGTAAAAGTGACTGCTTTGTATGTAAGGTTATTTTTATGGTTAGGAACTGCGAAGTGCCAATGCTTCGACGATTGAGAGAGGAAGTTTGCTATCCTTGTGGTGTTGAAATAAAAGTCGTCGCTGTTTATAAAAGTATAACTCAAGACGTGTCTGTAACTAACGATGAGACTTCAGAAGAAGTTCTTCCCTGCGGTTCAAATTTGCCGAAGCTTCTCTCGGACTTCAAGCTTCAGGAAAAGAACGCAGCTCTAAAACTTGAGAAGAAAAGCTTGTACTTGGCCCACGTTCTTCATCCGGGATGCTTCTACGTCATGACCGAGATAGTCCCTGATGAGAAACAGTCCCGTCTGATACAAAATGGAGACTTACAAGTACTGATAAGTGTTAGCTCTGATGTGCTTTTGGAGAGAATCTGCTGGTGTGAAAGATGTGACTCAAACTCGCCAAAGGAGACAGAAAGCAGCTGTGATATTATCAAGGCACTTACTGATTTGAAGGAAGATTTCTTGAAGAATGATACCCTGTTAAGTGTGGACTCTGTTCTTGGTGAAGGAACCCTTACAGGGGTGACCGGAAACGAGACGTCTCTGAAGCAAAGCCGTCCCTCCAGTACGCAAGTTAGTTTCCATGGTCTGATTATTAGCCGAGATCTGCGCCAGTCAGACTGTCCCAGTCAGCGGCTTCCTAATGATCTAGTGGAACTGCCTAAGTTTGGTCCAGTCAAGATGTCAGTCATAAAAGATCTACAGCTAGGCTTTACTCTGCTCGGAAACAAGATTATTCAGCTGAGAGTGCGTGACCTGGATTCACCAAATACCATATCTGTTTACCTGGACTTCAGAAAAACCTCTTATATTGATGGAATTTTACCTGGTGCCATTGTCCGATTCCGAAGGTTGGTGAGAAAATTCTCCCGAACCAGAAACATGTATTGCACATTTGAGGCGTGTTCTTCGATTTTCGTGAAAAGACGAGCAGCAAAGAACTTAACCAGCATCCAGCCGACACCACAATTTTCATTCAGCATAGCAGCATCTTCATCTAATGAAGCGCTCACCAAAGAACTTCCAAATCAATGTCTCATCAGACTCATTCAGAGCGAAGCACAAGGGAGATTTGTTCAAACCATTTCACGTGTGCGTTGCCGAGTAATAGCTGTGCAGAGAGCTAGCCTGCGGTGGCTTTGTAAACGGTGCGGTGAACTGGTAGCTAGGAACGAGTGTGCCGCTTGTTGCTTTTCTTCCCCCGGATACAAGCTTAATGCCGAAGCCAGATGTGTTGTGGAAGACGGTACAGGCGAAGCCCAGGTCTACGTGTATGACGACCTTGTGCCCACGTTATTGAGACTTTCCGATCAGCAGTGGCATCATCTTCAGGACTTGGCTATGCGCTCTGGCGAGTTACTGTATCAGCGGCAATGGTATGGTGCACGCGGCCGAGTGAAGACCAACTTGAACGAAGGAAGCTTGTCCAGAGAAACAGAAGCTAAGTTAACGTGGGAGTATCATTGTGTTTCATCCCAGGTCTCACGGCGCATTGTGCTGCAAGGAAAATTGTTTCGCTTCAGGAAGGATGGAGCTAACAACACAGAACAAGGCAAGGAGTCCCGTAATATTACTGTGGGTTCCACAGAACACTCTACACTCGTGTTACCTAAACTACTCTTACGAGCTGTGTCTATTGCCGAGGTTCGCGCGACGGAGGAAATTCGACAACTGCTTCAACAAGGACGAGATGGACTTCAGTGA

Transcript

rna-Spis74_mrna

GAGAAATTCTCTGCGTTGTGAGCCAgcgttttttttctctgattgcAAACTAGAAAAACTTAACTTTAAATGAGTGATTTCCTAACACGCTGCAGGGATTATTACCGGGTTGGATTTACGCAGAATGAAAAGGAATGGTTGCGGACGTTTTATTATGATATAGAAAAATGTATCCGACAAAATGAAAGCGAAGCGGAGTTCGTCGAAGTATGTCTGGCTGTGTTGCATCAGATAAGAGATTTACGCTGTGTCAAGGATACAGAGGATTATCAAGAATGGCTTCCTGTCAGTCAGCAAGTTGTACCACTTGATACACTACTTAGAGAAAGCAGCGATGTTTGTGGAGGTTCTCTCTGTAGTCAATCAGAAGAAGAAAGTTCGATTCCAGAATACAAGCATGCTTGTAAATTGCCTTTTATCCTCTTGGGATATTTGACTTCACAACCCAAGTCTTCCAAATCTGGAAAAGCTTTAGGCACTCTGTACCTAGAGGATAATTTTGCAGCGATTGTTTGTGAGATAATAAATCCCAACAAGGACTACCTTGAGAGACTATTACTCATTCCTCAGTGGAATTATGTTCCCCTGTCATCTTCATCAGCAGTTAGGGAAGATGTAAAGGATAGTAATGGAGGTTACCTTGAGATCATCAGCATAGGCACACCAATTGTAGTTACAAAAACAAGTGAACCTGATGACAATTTCTCCACAAGTTATGTTTTCAGCATCAAAGAGTTTCAGGAACAAGGGAGTTCAACAGTCAACTTGAATATGCAAGGATCCATTTTCACTTTGAGCCCAATTCACAGCATGAGTGTTGGTAAGCCTTTCTTTCTGGTCAAAATTTCCTGTGCTGAGACAAGCCTTACCACTTCCATAGTGATTCAGGGTGAACAGTTTATGTTCTGGCACAATTTCCTTCAAATCAATGAGCATTATGTTTTCCATAACCTAAGAGAGACTACAATGAACAAGGgaactcaaaatgaaagaaagatcCTTGCCACAACGCGTCGATCAGACTTGCGGAAATACCGACCAAGAGGCGTGAAACGAGTTCATGAAGACGAACAGAGAGAGTCAAAGCGCCCAAGAATCTCAAAGGAAAAAGATGAGGTCTTGAATCAGCGTAGAATATTTCCAAGTCATAAAGGCTACTTGAGATGTGCAGGGACCAACCGGGCAGAGGCAACAGTATTACAGCTTGGAAAACCAAAGCTACCGGTCAACATTACCTACACGggCGTTATTACAAGATGCATCAACCGTGAAGCTGGAGTTTTTGAACTGGACAATAAAATAAGTTTGTACATTAGTCACCAGCCTTCTGCGAATTGTGGTCGCGGTCTGCGTGTTGGGGCACACGTGACTGCTTACAATGTACACTTGTGCAAGAAAGGGAAGAAAACCCTTGGCATGTGCTGCTGCACACAAAGTACAGTGCGGGTGGTAAAGTTCTCACTTCTAGCTTCACCTTGGAAGCCGTTTAACCCATGTGAGAGTCCCTTGGCTTTACTTGGACAGAATCTCACTTTGGCTGATTATGTGGACCTACTCGAGATGTGCCAAAATGTTCTGGATAAATTCTCAGCACTATTCAGGACAAGGCAGCTTGTCGCTTACTCTGTAAAACAGAGCAGaaaagtaaaagaagatTTGGCGAAAGAAAGTGTATTGGAATTGTTGCTTTCCTTCGTAAAATGCAACTCAGTTACTATGAATATTCCATCAAGAAACATCTATGACGAGTTCTTCGAGGTACCGCATGAATGCCACCCAAATCAGACCAGTCCACTGACCTTCCCGTGGCTCCCTACAATCAAAGAGTTCCTTGATGCTGTAAGTCAGATAAGCTGTGATGAGCCTTGGCTGAGTGGACTGCCTGGTCAAACAACTACATTTACACAGGAAGAGTGGACGTACAAAATTTTGAGTCAAGAAAGCTTCAGTCGTCCATTGATTCTGGTTGGTTGTCTCGGTTACTCTTCAAACGCTGGCCAATTGCGCTTACTTGATCAAACGGGAGAAATCAACTGCATGATCGCACCTAAAGACGAAAATCCCACGGAACATGATTGCGCTAAAAACTGCTGTGAGAAAGCTACTATCAAAGAGCAGTGTTCACGATGTCCCTTTTCACAAACCCGGAGTTTGAGTGCAATGATTCAAATTAACAAGTTTGAGGTAGTTGTGGAGAAATTTCACTCTAGAGGTCTTGTTCAGGAAGATTTGGATAGAGATAGAAATCGATTATACGTGCAGTTCTCCTTTGATGATACGGAAATCTTGATTCCTAAACACGAGAGTAAAGTGGAGAAATATTGTACAAAAAGGACAAATAGATTTGAAGCAGGCACAACGGATGCAAACTTAGAAAGAGAGCTCAACGGAAATCTTGAAAGTAAAAGTGACTGCTTTGTATGTAAGGTTATTTTTATGGTTAGGAACTGCGAAGTGCCAATGCTTCGACGATTGAGAGAGGAAGTTTGCTATCCTTGTGGTGTTGAAATAAAAGTCGTCGCTGTTTATAAAAGTATAACTCAAGACGTGTCTGTAACTAACGATGAGACTTCAGAAGAAGTTCTTCCCTGCGGTTCAAATTTGCCGAAGCTTCTCTCGGACTTCAAGCTTCAGGAAAAGAACGCAGCTCTAAAACTTGAGAAGAAAAGCTTGTACTTGGCCCACGTTCTTCATCCGGGATGCTTCTACGTCATGACCGAGATAGTCCCTGATGAGAAACAGTCCCGTCTGATACAAAATGGAGACTTACAAGTACTGATAAGTGTTAGCTCTGATGTGCTTTTGGAGAGAATCTGCTGGTGTGAAAGATGTGACTCAAACTCGCCAAAGGAGACAGAAAGCAGCTGTGATATTATCAAGGCACTTACTGATTTGAAGGAAGATTTCTTGAAGAATGATACCCTGTTAAGTGTGGACTCTGTTCTTGGTGAAGGAACCCTTACAGGGGTGACCGGAAACGAGACGTCTCTGAAGCAAAGCCGTCCCTCCAGTACGCAAGTTAGTTTCCATGGTCTGATTATTAGCCGAGATCTGCGCCAGTCAGACTGTCCCAGTCAGCGGCTTCCTAATGATCTAGTGGAACTGCCTAAGTTTGGTCCAGTCAAGATGTCAGTCATAAAAGATCTACAGCTAGGCTTTACTCTGCTCGGAAACAAGATTATTCAGCTGAGAGTGCGTGACCTGGATTCACCAAATACCATATCTGTTTACCTGGACTTCAGAAAAACCTCTTATATTGATGGAATTTTACCTGGTGCCATTGTCCGATTCCGAAGGTTGGTGAGAAAATTCTCCCGAACCAGAAACATGTATTGCACATTTGAGGCGTGTTCTTCGATTTTCGTGAAAAGACGAGCAGCAAAGAACTTAACCAGCATCCAGCCGACACCACAATTTTCATTCAGCATAGCAGCATCTTCATCTAATGAAGCGCTCACCAAAGAACTTCCAAATCAATGTCTCATCAGACTCATTCAGAGCGAAGCACAAGGGAGATTTGTTCAAACCATTTCACGTGTGCGTTGCCGAGTAATAGCTGTGCAGAGAGCTAGCCTGCGGTGGCTTTGTAAACGGTGCGGTGAACTGGTAGCTAGGAACGAGTGTGCCGCTTGTTGCTTTTCTTCCCCCGGATACAAGCTTAATGCCGAAGCCAGATGTGTTGTGGAAGACGGTACAGGCGAAGCCCAGGTCTACGTGTATGACGACCTTGTGCCCACGTTATTGAGACTTTCCGATCAGCAGTGGCATCATCTTCAGGACTTGGCTATGCGCTCTGGCGAGTTACTGTATCAGCGGCAATGGTATGGTGCACGCGGCCGAGTGAAGacCAACTTGAACGAAGGAAGCTTGTCCAGAGAAACAGAAGCTAAGTTAACGTGGGAGTATCATTGTGTTTCATCCCAGGTCTCACGGCGCATTGTGCTGCAAGGAAAATTGTTTCGCTTCAGGAAGGATGGAGCTAACAACACAGAACAAGGCAAGGAGTCCCGTAATATTACTGTGGGTTCCACAGAACACTCTACACTCGTGTTACCTAAACTACTCTTACGAGCTGTGTCTATTGCCGAGGTTCGCGCGACGGAGGAAATTCGACAACTGCTTCAACAAGGACGAGATGGACTTCAgtgaatttgtttcaaagtaaACTACTGATGTCTCGTCAGAGAACAAACTCTAATATCTCTCTAAATTTTACATGAACGAATATCaattcaactgaaaaaagaGCAAGTTTCTAATACTTTAATATGTAAATAACACAATTTCCTTTGGAGCTATGTTTAGTTTCCGTCAAATTATAAGACTCACTTAACTTGGCAATAAATTACTATGAAAATaggttttttaatttacaaggaaatactGCTTCAACCGCCGAAAACATTTGTTGAATTAGTGTTTACTGTTAGAGTTTGATAAACTCTTCAGTGTTACGTTGCAGTTAGCTTGGACATATCAAGAGTAAAGCGGTCCACATTAAACGGCTTATAGAGTCTGTTAGGCGACAATAAACATTCCACGGCTGTTCGTTTATCGCAATGGCCTACAATCCATTGAAGTCTATCctgaaatgtacaaaataaaC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15489 all species →	CTC1	CST, telomere maintenance, complex subunit CTC1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042617 all species →	Family	CST complex subunit CTC1-like	Interproscan
IPR029156 all species →	Family	CST complex subunit CTC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14865 all species →	CST COMPLEX SUBUNIT CTC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0010833 all species →	Biological Process	telomere maintenance via telomere lengthening	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan
GO:1990879 all species →	Cellular Component	CST complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23311	CTC1; CST complex subunit CTC1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.