Gene detail

Detailed information of PFX34901.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1:2903677...2911618
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis240_mrna

CAATTTTCAACATGGCGTTCACGCGTAGACATCCGATTAGATCTACAACATTTCTTCACCTGTCCCGTGTAGTTTCGATGATGTATTTCAGATAGATAAAGTTTAAATTCTGAGCCATGACGGAAGAATCGAGATTTTCCATTGTTTCACCAGAGTCGGTGAAACTGTACGCAGAAATTTGCGGCGTTCAGACTTTGACAGACGATCTTGCCAGCTCCTTGGCTGAGGATGTGACTTACAGACTTCGCGAGACGCTCCAGAGCGCCTCGCAGTTCATGAAACATGCTAAGCGTAGACGGCTGTCAAGCGAAGACTTCAACAAAGCGTTAGAAAAGAGTAGTACAGAGCCAATCTATGGTTACGGATCCATGGAGGACATGTTGTTTCGAAGTGCACCAACTAAAGATGGGgacattttctttgttgaaaacAAGGAGATCAGTTTGCGAGAGCTGGCAATGAATGTGGTTATACCCACTGACCCCGGGCAGAGGAGTGTTAAAGCAAATTGGTTGTCTGCTGAGGGTACAGCACCTGCTGGAAGTTATGCTCAACCAAGTATGGGGCGAGTTAACAGTGATGGAGGCACTGTCCAGCGTCCCCTCTCTCAGGTGTGTTTGAGTTACTATGAGCAGATAACAAAGGCAGTTTTGGGTGATGATGAACAATGCAACAGAGTGGCTCTGAGGGATCTGAAAACAAATCCAAAAATCTCTTCCTTACTGGCATATTTTGTGAACTTTGTTGCATCGGGGGTGAAGATCTACAGCCATGACTTGATGCAAGTAAGCAAGTTGTTGAGTATGGTCAACTCACTGATTGACAATTCATCGCTATTCCTTGAGCCTCATGTTATTCAACTGGTGACAGCAGTCATGTATTGTCTGCTTGAGTCTTTAGCTGCTTCTCTGAACCCAAAAAACGACCACTGGGGATTGAGGGATGAAGCAGCTTCCATTCTGGCTCGCATTAGCAGAAAATGCAGCAATCCAGTAAACTACTTGAGACAGCAGCTATTAATGACACTACAGGAGGTGTTATTAGATGACGGGCGGCCGTTCTGTTCCCATTATGGTGCTGTGGTAGGATTGACTGAACTGGGACCAGAGGCCTTAGAGCAGTATGTGATGCCACATCTCCGAACCTATTGGACACAGCTTCAGCAAGTGTTAGACGACAATAGCCAATCAAATGCGCTGCTTCAAGAGGAAGCTTACCAAGTTTATGGCGCTCTTTTGCAGGCCGCTGGTTGTCTGTTGAAATCCAAGCAGCATGGCGTGCCTATGACTTCCCTCGGTTTTCAAGTCAACAACTCGCACCCAGCCCTACGCACCAATCTATCTCCGTGGGCTGGAGCGAGCGTACATCAGCGCCCAGCACCCGTGGCAAAGTCCCGATCCCGGTCAAGTTCGACTGGTCTCGCTTCGAATCCCTTTCAGTTGTACCAGCAGCTGTACGATGTGTTCGGCGATAGTCTAGGTCCCAGGACTGCACACAACAACTGGCAAGACGCGGTTGTCACCAAAACTAACCAGCTTCGGCTGCAACCATTTGCACATGCGTACTTTCCCTTACGACCTCTGCCGCGTGATGCAAATATTATCAAAGAGTTGATTAACAAAGCCAAAGAGAAATTACAGACATCTGGTTCACAAAATAACACTTTTGGTACCAAAAGGAAGAGGACTTTTGACGAAGCATCAAATAAGGGTTCAAAAGACAGACCTAAGAGCAAAAGGATCTGTTTGACTTTGAGGCCCTCTTTCGTGAAGATCTCTCTTGCGCCTATGGATTTGGATCCTGAGGAACTCGGTTCATCGCGAGGCACAACGGTGGGAATATCTAGGAGGAGCAGTCAGAAGGGGCTTGTAAAAGTTCCGAGACATGTTCAGCGAGTGACAAACTGTGCTGTTGAAACTGGACGCATTCGAAGAaagtcaagaaaacaaaatcccTCGCTCAGTAACAGAGTCAAGTTCGACTATCATATTGGTGTCACTTTATAACACCGCTATTCTTGTCCTTGAGAAATACCTCAAGATAACAATGTTCATGTAAATATAACTCGGACTAAATATTTACGATGGGTATTTATGCATGGTCGCGCTTCTTTTCCGTGAAGTTGATTGGAACTATTTCTTTTCCTAAATCTCTCCGAAGCCACAATTCAAACGTTTAGGGAGAAAAACTGTCAAATCAGAAGTCTTTAAAGCTTCACGTGACCAGTTCAAAGCGCGGGAAAGTAAAACGCGTGCGACCAAGTTGTGATTGTTGTTGGGTTTTGACACGGATGAGTTTGGCACGTAGCCAAAGTAAAAAGGTCGTCCATTAGACGGCGGTGGAATCATCGGGCTTCTAATGCACACAGGCAATTAAACTTGTTATGAAAGATAcggcaatttttgttttttttggtggtTTCATAGAAAAGATAAAGTTGTATTTataattgtttgtctcacgcgTCAGTCATCGTCAAGTGTTATTATTGTCAGTGTTGGCAGTACGTTATTTTCTCTTCAAGGACGACAGAACAAGTAAGCAAAATGTTCCCCTTTGCTTTTTCTGACACATCGTGGAAATGTAATACACATGGTTACATGAACAACACAGTTCTTAAGTCTAAATCCTCTTCAACGTCTGTCATTTGATAAAGCCTTTAACGTCTGTCATTTTATAAAGCCTTCAACGTCTGTCATTTTATAAAGCCTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07571 all species →	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan
PF02969 all species →	TAF	TATA box binding protein associated factor (TAF)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011442 all species →	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan
IPR004823 all species →	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046344 all species →	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan
IPR037796 all species →	Family	Transcription initiation factor TFIID subunit 6	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10221 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046695 all species →	Cellular Component	SLIK (SAGA-like) complex	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03131	TAF6; transcription initiation factor TFIID subunit 6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.