Gene detail

Detailed information of PFX35000.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1:526595...539407
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RECQL4

ATGATTGGTTCAAAAGCTATGAAAGAACTGTCGTCGCTCAAACGAGAGCTAAAATGCTGGGAAAATATGTTTGAACGAACCCATGGCCGTAAGCCCAGCAAGGATGACATTAACACTGGTTCAGAAGAAATAAGAGAATCATATAAAAGATACAGAGTACTGAAAGAATATTTTTTCAAGAAAGAGACTGCAGAATGTCAACAGGATGACAGTGATGAAGTTTTTGGCAAGAATTTAAACAAGAAAAAAGAAGATTTAAAGCTTTCTACGATTCCATTCCGTGCAAAGGAATGGGCTGACATTACACCTGTCAGATTATGTCACGGACAGAGGCCTACGAAAAAAGCTCATGAAACACCAACAGTTGTAAGGGCTCCAGAGGGTAATGTAGACAAGGATGTTTTAGAAGTCAAGCAATGTGAAAATACAGAGAAAGATGCAACCACATTGATAAATTTCAAAAGCAGTTTGCAAGATGTTAGAGTGGTTGATACCTCAGAGCATACTCTGAAGTCCTTAACAAAGAAAAGAACTGGGTCAAGTCTCCTGCTTCCTAATCGTCAATCAAGAAATGTTCAATTCAGGAAAAGGGGAGCAATTTCTTCAGCATGGCTTGAAAAATGTAAACCTGAGTTGCCTTTAAATGAAGACCATCAAGTGTTGAGTGTCAGTGGATTACAAGAGAATTTTTTGGAATTAGAAAACTCTCCCTCCAATATGCAAACACCCATTGCTAAAGGAAAGGTCTTGGATAGAGAAAACTGTACTTTTTCTAGAAAAAGTGAAATAAATGTTGATGCTCTTTCTGAGATTGGGAATGAAACTCATATGAATGTTGCAAAGCATAGCATTGGAAGGAAGATATCTCCTGGAACAGGATTTAAGGCATACAACAAAGGAAGTGCTCAGGAGCCTAGTAACAAAGAAAACATTAAGACTGTTGCATCAAAATACAAAGAAAGGGAAAGTAAAACATATCTGAATGGAACACAACATTTGAAGGTCAGGGATTTGCCTCAGACATCACAGGAAAAATGTTTGGCTGGTTCTGTATCTGCTGCTGATCCTTTTAAGTTGGATCACATGGAAATGAAACGTGATCCACCAGAGAGATCTGTAGAAGCTTCCCAAGAAATTCCAAACCATAAAAGAAAGGCTGATGAAAGAACCTTGAGAAACCTGGAGAAACCTCACAAGAAGTTGAGATGTGAAAATGATTATGACGAACAAGTCCATGAAGAGGGCAAAGGGGGACAAAGTGAAGATGAAGACAGGAAAGATGTGCCAAATACAGTAGTTGAGCAAGAGCTGCCTCTCACAACTGCTAAAGTAAAAGTGTCATCAGGCCTTGTCAGTGACAATTTCCAGAAGCTCAATATGAAGCACCGTTCCTATCGGCGACGTGGAGGTCGTATCAGTGGATCTGCACACAAGAGAAGAGCATGGAAACAGATCATGAAATCACGAGGTGAGTTTGTTCCACAGAAAAGTTGGTCAAGCAGAGGACAAAGTGGAAGGGTTGGAAGATCTGGAGCTTGTTTCAAGTGTGGACAGGAGGGTCACTGGGCTAAGAACTGCAAAGGCCCTAAGAAATCTAAGGCAGTGCCTAAAGTGGAAAACTGTGATCAAGATAATGATATTGATATGGATGAATTTGAGCCACTGCCCTCTATAGAAGAAGCTGCCTTAATGGCTGCAGGAATTCATAGGGATGATGAAGCACACGTTGAAAATCTTGTCATCTTACCTCATAAACTACCAAGGCCAGTGGTCATTCCACCCACCCCTCCCCTAGTAGTGGAGCCACTCTACCAGCCAGTGGATGGAAAGCCTGTAGAGGTAACAAATGAAGTGTTGTCTTCTTTGGAGAAATTAGGATTTTCAACATTCCGATCAGGACAACAGGAAGCTGTCATGAGAATCCTTTGCGGGCTGTCATCACTTGTGGTGCTCTCCACTGGAGCTGGTAAATCTCTTTGTTACCAGCTTCCTGCCTTTATGTATACCCAACGCTCACCATGTTTAACACTGGTTATTTCACCTCTTGTTTCTCTCATGGAGGATCAGATTAGTGGTCTTCCTCATGGATTAAAAGGTGCCTGTCTTCACACAAACCTCACAAAAGCCCAACGTCAGAAGGTAGTAGAGGATCTGTACTCTGGTAAGGTGTCCGTCTTGCTGCTCTCCCCTGAGGCCCTGGTAGGAGGGGGTTCAGGAAATGGGTGCCTTCCTTCTGTTTCACAGCTACCACAGATTGCTTTTGCTTGTATAGATGAAGCTCACTGTGTTTCCGAGTGGTCGCACAACTTTCGACCCTCTTACCTTAGAGTTTGCAAGGTCCTTCGGGAGAAGTTTGGCGTGCGTTGTTTTCTAGGATTGACAGCCACTGCCACACGTGCAACAGCTGCTTCGGTCGCTGAGCACCTGGGGATTGTACATGATCCCGAGGCTGTGATCAGAGGTGGAGCTGTACCACCTAACTTGTTCTTATCTGTGTCATGTGATAGTAATAAGCAGCAGGCATTGTTGCAGTTGCTTCAAGGTCGGCGCTTCTCACAATGCGATTCAATTATAATCTACTGCACCAGAAGAGAACAGACTGAGAAGCTGGCTTCGACCCTACGCACGTGCTTACAGAGCACCAGGCTGGCGTCAGGTTGGAACGGCCAGGAAGAATTAGTGGACGTGGAAGAGAAGCCTGGGGAGACTAAAAAGAAATCCGAAGGGAAAGGAAAGAAGAAGACAGCCAAAGCCGCTGTTCCCAAATGGGATGCCGAATGCTACCATGCCGGGCTGTCTGCCGCCCAAAGACGTCGTGTTCAGAAGCGCTTCATGACAGGTCAGCTGCGCATTGTGGTGGCGACTGTAGCATTTGGCATGGGTCTAGATAAATCAGATGTTCGAGCTATTATCCATTACAACTTACCGCGCAGCTTTGAGAGTTATGTGCAGGAGATTGGCCGTGCGGGACGGGACGGGAATCCCTCGCACTGTCACGTATTTCTGGATCCCGAGGGTAAAGACATGTGTGAACTTCGTCGGCACGTTTATGCCAACACAGTGGACCGCTCTTCTCTTAAGAAGCTGGTCCAACGGACATTTCCACGTTGTGAGTGTAGAGAACTTCAGAAACAACAACGGCAACAGGTTGCGGCAGAGAGTGATATGAACGACTATTTGGATTTAGAAGAGGATTATGACGACATCTTAGAAACCAACTTGGAAGCTGAATTGCAAGCTGTTGAGCAACAGTACCAGAGGTAG

Transcript

rna-Spis40_mrna

AGAAGATGGTGGACTCTTGAGTCTCCGAATAGTTCGTTTCTTTTTAACCAAGACTTTGGAGCTTAAGACATTAGAACTCCAACATGATTGGTTCAAAAGCTATGAAAGAACTGTCGTCGCTCAAACGAGAGCTAAAATGCTGGGAAAATATGTTTGAACGAACCCATGGCCGTAAGCCCAGCAAGGATGACATTAACACTGGTTCAGAAGAAATAAGAGAATCATATAAAAGATACAGAgtactgaaagaatattttttcaagaaagagACTGCAGAATGTCAACAGGATGACAGTGATGAAGTTTTTGGCAagaatttaaacaagaaaaaagaagatttaAAGCTTTCTACGATTCCATTCCGTGCAAAGGAATGGGCTGACATTACACCTGTCAGATTATGTCACGGACAGAGGCCTACGAAAAAAGCTCATGAAACACCAACAGTTGTAAGGGCTCCAGAGGGTAATGTAGACAAGgATGTTTTAGAAGTCAAGCAATGTGAAAATACAGAGAAAGATGCAACCACATTGATAAATTTCAAAAGCAGTTTGCAAGATGTTAGAGTGGTTGATACCTCAGAGCATACTCTGAAGTCcttaacaaagaaaagaactggGTCAAGTCTCCTGCTTCCTAATCGTCAATCAAGAAATGTTCAATTCAGGAAAAGGGGAGCAATTTCTTCAGCATGGCTTGAAAAATGTAAACCTGAGTTGCCTTTAAATGAAGACCATCAAGTGTTGAGTGTCAGTGGATTACAAGAGAATTTTTTGGAATTAGAAAACTCTCCCTCCAATATGCAAACACCCATTGCTAAAGGAAAGGTCTTGGATAGAGAAAACTGTACTTTTTCtagaaaaagtgaaataaatgttGATGCTCTTTCTGAGATTGGGAATGAAACTCATATGAATGTTGCAAAGCATAGCATTGGAAGGAAGATATCTCCTGGAACAGGATTTAAGGCATACAACAAAGGAAGTGCTCAGGAGCCtagtaacaaagaaaacattaagaCTGTTGcatcaaaatacaaagaaagggAAAGTAAAACATATCTGAATGGAACACAACATTTGAAGGTCAGGGATTTGCCTCAGACATCACAGGAAAAATGTTTGGCTGGTTCTGTATCTGCTGCTGATCCTTTTAAGTTGGATCACATGGAAATGAAACGTGATCCACCAGAGAGATCTGTAGAAGCTTCCCAAGAAATTCCAAACCATAAAAGAAAGGCTGATGAAAGAACCTTGAGAAACCTGGAGAAACCTCACAAGAAGTTGAGATGTGAAAATGATTATGACGAACAAGTCCATGAAGAGGGCAAAGGGGGACAAAGTGAAGATGAAGACAGGAAAGATGTGCCAAATACAGTAGTTGAGCAAGAGCTGCCTCTCACAACTGCTAAAGTAAAAGTGTCATCAGGCCTTGTCAGTGACAATTTCCAGAAGCTCAATATGAAGCACCGTTCCTATCGGCGACGTGGAGGTCGTATCAGTGGATCTGCACACAAGAGAAGAGCATGGAAACAGATCATGAAATCACGAGGTGAGTTTGTTCCACAGAAAAGTTGGTCAAGCAGAGGACAAAGTGGAAGGGTTGGAAGATCTGGAGCTTGTTTCAAGTGTGGACAGGAGGGTCACTGGGCTAAGAACTGCAAAGGCCCTAAGAAATCTAAGGCAGTGCCTAAAGTGGAAAACTGTGATCAAGATAATGATATTGATATGGATGAATTTGAGCCACTGCCCTCTATAGAAGAAGCTGCCTTAATGGCTGCAGGAATTCATAGGGATGATGAAGCACACGTTGAAAATCTTGTCATCTTACCTCATAAACTACCAAGGCCAGTGGTCattccacccacccctcccctagtAGTGGAGCCACTCTACCAGCCAGTGGATGGAAAGCCTGTAGAGGTAACAAATGAAGTGTTGTCTTCTTTGGAGAAATTAGGATTTTCAACATTCCGATCAGGACAACAGGAAGCTGTCATGAGAATCCTTTGCGgGCTGTCATCACTTGTGGTGCTCTCCACTGGAGCTGGTAAATCTCTTTGTTACCAGCTTCCTGCCTTTATGTATACCCAACGCTCACCATGTTTAACACTGGTTATTTCACCTCTTGTTTCTCTCATGGAGGATCAGATTAGTGGTCTTCCTCATGGATTAAAAGGTGCCTGTCTTCACACAAACCTCACAAAAGCCCAACGTCAGAAGGTAGTAGAGGATCTGTACTCTGGTAAGGTGTCCGTCTTGCTGCTCTCCCCTGAGGCCCTGGTAGGAGGGGGTTCAGGAAATGGGTGCCTTCCTTCTGTTTCACAGCTACCACAGATTGCTTTTGCTTGTATAGATGAAGCTCACTGTGTTTCCGAGTGGTCGCACAACTTTCGACCCTCTTACCTTAGAGTTTGCAAGGTCCTTCGGGAGAAGTTTGGCGTGCGTTGTTTTCTAGGATTGACAGCCACTGCCACACGTGCAACAGCTGCTTCGGTCGCTGAGCACCTGGGGATTGTACATGATCCCGAGGCTGTGATCAGAGGTGGAGCTGTACCACCTAACTTGTTCTTATCTGTGTCATGTGATAGTAATAAGCAGCAGGCATTGTTGCAGTTGCTTCAAGGTCGGCGCTTCTCACAATGCGATTCAATTATAATCTACTGCACCAGAAGAGAACAGACTGAGAAGCTGGCTTCGACCCTACGCACGTGCTTACAGAGCACCAGGCTGGCGTCAGGTTGGAACGGCCAGGAAGAATTAGTGGACGTGGAAGAGAAGCCTGGGGAGACTAAAAAGAAATCCGAAGGgaaaggaaagaagaagacaGCCAAAGCCGCTGTTCCCAAATGGGATGCCGAATGCTACCATGCCGGGCTGTCTGCCGCCCAAAGACGTCGTGTTCAGAAGCGCTTCATGACAGGTCAGCTGCGCATTGTGGTGGCGACTGTAGCATTTGGCATGGGTCTAGATAAATCAGATGTTCGAGCTATTATCCATTACAACTTACCGCGCAGCTTTGAGAGTTATGTGCAGGAGATTGGCCGTGCGGGACGGGACGGGAATCCCTCGCACTGTCACGTATTTCTGGATCCCGAGGGTAAAGACATGTGTGAACTTCGTCGGCACGTTTATGCCAACACAGTGGACCGCTCTTCTCTTAAGAAGCTGGTCCAACGGACATTTCCACGTTGTGAGTGTAGAGAACTTCAGAAACAACAACGGCAACAGGTTGCGGCAGAGAGTGATATGAACGACTATTTGGATTTAGAAGAGGATTATGACGACATCTTAGAAACCAACttggaagctgaattgcaagCTGTTGAGCAACAGTACCAGAGGTAGGTGGAGACTCAAGCGCAACACGATACTGATAGAAGACAAAttgaagaaggagaaaaaggaagTGATTCAAATCTGAAGTTAGATGAACAAGATAGTGATCCTCCAAACGATGACAATATCGAGTATCCCAGCCTTGAAAATAGTGTCAAAGGAACCTTAGACTCATATCCTGCTTGTGACTTTCAGGCAAGCGCGAAGTCCACAGAATTTGCTGGCAACAATCTTCATTCAGCTGAGCATGTGAATACTCATCGCGTATGTGGCGGTCACTCTGTTGCTATGGTGACAGACGTCGTCGTTCAAGAGCTCGACCTCCGTGAAGAAAGCATTGCTACTTTACTCTGCTACTTGGAGTTGCATCCTTGCCGCTGGCTAGAAGTACTGCAGCCAGTCAAATCAACCTGCACGGTGAAGTTTTACGGTGGTTATGCGCAGTTGAGGGAAGTGGCAAGGAAAATTCCACCAATTGCTGCTGCCGTGTCGCACACCAGTACAACGCCTGctagttttaaaaaatcaggAACATTAACTTTCCCAGTGGTAGAGTTGGCTGACAAGATGGGCTGGGACCTAGCGCCAGTTTGCCGTGAATTGAGAGCACTTCAGTGGAACACATCATTGTCAGGCGATAATTCTCTCTCAAACATGGGGCAATCAGGGATCTTAGTGGAGTTCTCGGATCTGTCCATACATGTTAGAGCGCCTGGGGACCTCTCGGACGCAGAGCGTGACAGTATTTGTGACTTCCTCGAGGATCGCATTCTGGCCGAAGAAAGAACTCAACTGCACCAGCTCCAGTTCGTCTATGACTCACTTAAAAGCGTTTCGTTCTCGGAGTTTTGGCAATGCGCTGACGCTGTAGACGAGGAAGCTGATAACCAACTCAAACGAATTGTCAAAAGCTATTTTAAGGAttgcaacaacaaaacaaaggagGAACTTGCAACTTTGGCAGAAGCCAGAAAAGCCTCTAGGGTTGTCCCCTCCAGTATCAAGCGTAATGATCACGTGAATTGGGACGGTATTGCACGGGATATCAGAGCCTTACTTGGGGTCCATCACGATCACTCGTTTACAGGTCGTGCTGTTGCGCGAATATTTCACGGTATTGATAGTCCGTGTTATCCAGCGGAGGTGTGGGGTCGTGATCGCCGTTTTTGGAGAAAACATTTGGACGTTGAGTTTAACAGTCTGCGAAAGTTTGCCACTCAAGAACTTGTTAGGTTCAGATGAGATAGGAATCTTGATTAACGAAATATTGCTGCACAGGAATATGAAATACTTCCCAATCAATgctacatttatttttttttaacaaggattcaatttttcatgtattgATGTTAAGAAAGCGTTGGAAAACGTACCTTCGTTTTTAGCAGTCGAAGCCATTActacgcaaacaaaaaatatactccagcaaataaaaaatatacagcagcaaatg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF11719 all species →	Drc1-Sld2	DNA replication and checkpoint protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR021110 all species →	Family	DNA replication/checkpoint protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710 all species →	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0009378 all species →	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10730	RECQL4; ATP-dependent DNA helicase Q4	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.