Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cassiopea sp. PORT0000214 · all data for this species · gene families
P_ENSNWCP00000012131.1 in CSP2 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00040 all species → | fn2 | Fibronectin type II domain | Domain | Interproscan |
| PF01186 all species → | Lysyl_oxidase | Lysyl oxidase | Family | Interproscan |
| PF00530 all species → | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013806 all species → | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR001190 all species → | Domain | SRCR domain | Interproscan |
| IPR000562 all species → | Domain | Fibronectin type II domain | Interproscan |
| IPR036772 all species → | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR001695 all species → | Family | Lysyl oxidase | Interproscan |
| IPR036943 all species → | Homologous_superfamily | Fibronectin type II domain superfamily | Interproscan |
| IPR017448 all species → | Domain | SRCR-like domain | Interproscan |
| IPR050912 all species → | Family | Lysyl oxidase-like protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45817 all species → | LYSYL OXIDASE-LIKE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
| GO:0016641 all species → | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | Interproscan |
| GO:0004720 all species → | Molecular Function | protein-lysine 6-oxidase activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0018057 all species → | Biological Process | peptidyl-lysine oxidation | Interproscan |
P_ENSNWCP00000012131.1.Genes whose expression across the transcriptome samples of Cassiopea sp. PORT0000214 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea sp. PORT0000214, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
