Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cassiopea sp. PORT0000214 · all data for this species · gene families
P_ENSNWCP00000012169.1 in CSP2 (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00317 all species → | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain | Domain | Interproscan |
| PF03477 all species → | ATP-cone | ATP cone domain | Domain | Interproscan |
| PF02867 all species → | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008926 all species → | Homologous_superfamily | Ribonucleotide reductase R1 subunit, N-terminal | Interproscan |
| IPR013509 all species → | Domain | Ribonucleotide reductase large subunit, N-terminal | Interproscan |
| IPR005144 all species → | Domain | ATP-cone domain | Interproscan |
| IPR013346 all species → | Domain | Ribonucleotide reductase, class I, alpha subunit, C-terminal | Interproscan |
| IPR000788 all species → | Domain | Ribonucleotide reductase large subunit, C-terminal | Interproscan |
| IPR039718 all species → | Family | Ribonucleoside-diphosphate reductase large subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11573 all species → | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004748 all species → | Molecular Function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0009263 all species → | Biological Process | deoxyribonucleotide biosynthetic process | Interproscan |
| GO:0005971 all species → | Cellular Component | ribonucleoside-diphosphate reductase complex | Interproscan |
P_ENSNWCP00000012169.1.Genes whose expression across the transcriptome samples of Cassiopea sp. PORT0000214 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea sp. PORT0000214, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
