Gene detail

Detailed information of PcrG000318.mRNA1 in Podabacia crustacea

Genomic Location: ptg000013l:1228961...1233447
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG000318.mRNA1

tggcgTTTCTATCATGTTTTCAGAGTTTGCGTTCCGCGAGTTACAGTTCGTCTTAATTTGTCCTGTTTGTTGGATGCTTGTGAATTTTTCACTTTTGGTAATACTTAATAACACCCTTAAAAATTCCAAAACATTTGTTCGAAGGGAAGCGCTATGCATGTTTTGGATATTTTCTAATCAAATGTGCACGAAATGGCTTCCACAGCACGTGTAGTGTGTTGGCAAAACCGCGAAGAATGGTTGCATGTTTATAGAGCGTTGTTTAACTTTGACGATCCAGAGGCTCAGAGGAGAGCAGTAGATCGAGTAGCTGCGTGGAAAAGCCGAAGTGTCGGTAAACTTCCTCTTGCAATCGAAAGCACAGCAAACCTCATCTCTGCTCATCTAGGATTAGTTGATGGCGGAACACGAGGTGTTCAAGGGCGATTAACCCTTGCAATGGCAATAGTACGCTTTGTAAACGGAATGGTTGATCAAGTTCAGAAAGGAAAGTTTGCACGTTCAGTGCAATCAATTGGAGAAGAAATTGGTTTTCCTGATTGGCTAGTTGATTTGAGACACGAAGCAACACATGCGAGCTTACCATCAATAGAAACCTTACATTGTGGGTTACGTGCCAGTTTGACATGGCTCCAGGATAAATACTGGGAAGCACAGCTAAACATGCACGAGGAAAGCACAGGGAAACTCCAGCAACTGATTAACAAGTATAGGGATGTTGCTTTGAGCCATGTTTCAAGAAGAAAAAAGATGAGCAAATTCAAGAGCAACAGCGAGCTGACAGAACTGTCAAACGAGATTGCAAGCTTAATATCTATGAGCAATTTATGGTCTGTGGTGCCAAGTTTGTTGTGCTACAGAGACAAGCTAGTGCCATCCTGTGATCAGTTAAACACACTACATATCAAATGGCCAACAGAAAACAGCTCTTCTGATTCCTACATATCTGATGTCCCAGTGGAGATTATTAATATGTGGAAGCCATTAATAGAGGCACTTGATAAAGAATCCTCAGAATTCACTGCATCTCTTGTACTTTACTTACTTGAAAATCAGTCACGTGTTCCTGGTAATCCAGCTCAGCCTGACATTTCTCACTGTTATGTTGAATGGGCAAAACTCTTGCTGCAATCAAAGGGAAAGCCTCTGGTATTGACAAGTGACCTTCCTTGGCTAAATTTATTGAAAACTGCTCTGGATAATGCGTCACCATATACTTTGACATTTATTCCATTAATTTTAGAGAACATCCCTTTAATTGATGCCACATTGAAAGAAAAAATCCAAAATCTGGTTTCAATTTTTGTTGGAGTATCTTCCCCTGACTGTGTTAGTTCTAATTACTCAGAAAACTCTCAAGATGTGGACCTGGAAGGATGGGTGACAAGTAGAAATAAAGCATGCACTGAAAAGTCACTGCAGACAAGTGAACCAAGACAAGAATGGCAAGTAAGTCATGATTCAACACAGTGGCATTTATTTCCATGTGGGGAAGTTCTAGGAACAGCAGATGTATCTCCAAATAATTTGGAACTACCATCACCTTTAGTGAATCCAGTAACATGGCAACAGAACACAGAATAAATGTCATGAACACGATGCAGTTATAGGCAATATTTTGGTAGTAATAGTGCTGAGAGCATCATTGTACTTATAAAAAGCCAGACCTAACTTAATGCTAAACCTTAGCAAGGCCTATAGCAATCTGGTGACTTACTAATAGTACAGTGAAGTTTGGTTAATGTAATCCAGTTTTGTTTCTTATCAAATCAGACTCTCCCTTTGAAGTACTCTCTCTCGTGTTACTCCCATTCCTTTAAGTCTGTACAACATAATGATTTGTTTGAATGCGTGTCATTTCTTTTCTCTTCAATGCACTCTCGTAGATATTTGATGATTCTTTAACTAaaggttcttgcacacgagaaaacatgtcgcagggacaagttgcaaggacaaaattaattaaatgaaatgttgtttacacatacagtacaATCTCATTTATCGAACCCTTGTTTCCCTTCGTCAGTCAAACACTATATCCCCCCCCCCCCGCCCCATCTTTCAAACTAAAGGTCTTCAAGACAGGATGCATACTCAGTTTAACTGTCAATTAGGTCTCGTTTAGGGCTGCACTATGAAAATAAAATAGAGTTTGAAAAAAAATTGAACAACGCCAGGATTTCGCCTGGCCATGCTGATATTTACGGTGGCCCACAAGTATCACAGCAATAATTTCAAGTCAAACAAGTGTCAACGTTGGCTTTAGTTTAGTTGCTGAAGTTTTAGGTAGGCCAAATTATTTTTGAATCAACGAAAaaaatctcgattttttgaacccttgatttttcgaaactcgccataactcgagcaatagtggctttccttccttagtcaaacctgactaaaattttacctccaatttgtctttcccttggaggttcgaaaaatcggaactcctctgtaTAGCATCAACAAAATCACGACATGTACGCACATGAAAAATGTAGCAGAAAGATGTCCCAGGGAAGTGTTTCAGGGACACGTTCCCCGTGTGAACTAGCACATCACACGGAACGAGTTCGTTTAAAAGAAAAACAAAAAGAAGCAGAATGGTTTAggcaacagaaatgaaaacgcgaagcaaatggttaactgaatgaacagcacaataggtttgccgtgcatcttggtgtttcttgactttcttacctgtctcccgcaaaacaacaacgtgaaacaactaacctctgtttgttttgaagaacgtaaactacgaagtgcgtttttcgtttgtatctttcgcattcctgtttggaacgctccttttactcatttTTTAAAACAACAAACCCAATGAACAGGGGAGGCTCCCTCCAGTGGTCCGATCCTTTCATATACCTTCGATAAAAAATGACTCCCTATTGAATTTCTTGAGGCTTGAATAACCCCTCCAAATAGTTAAATGTATCGACTATGTTAGTGGTTCTGTTCGAGCCGGACATATCTGGTTCTATCGCTCTGCGCCCACGAGCGTGAAAGTAAGAATTAAATGTCCTCTTGTGCTCTTGGGCATGACAATGTTTGCATTCCTGTATTCGTTATAACTAAAGACAAAAAGGATAGGACTCCaatacactcttttttattttataagaatattgttttcccaggcctaatattcttatttttctgccgattttaggcagaaaatattcttgtgatattcttaaattaagagtttatcatgtttctttttacagtttagttcatgtattttgtgctgcatgccttacatttgtataacatgtaccattcatcgaactggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04031 all species →	Las1	Las1-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007174 all species →	Family	Las1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15002 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0090730 all species →	Cellular Component	Las1 complex	Interproscan
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16912	LAS1; ribosomal biogenesis protein LAS1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.