Gene detail

Detailed information of PcrG000592.mRNA1 in Podabacia crustacea

Genomic Location: ptg000016l:2940758...2946743
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG000592.mRNA1

ATGTCTGCAAGTTCGAGTTTCTTTCTGTTAGCCGTTCATTTTGTGTTAATATTGTTCCAAACATTAAACAGCAATGCATTTATCTACGATGGTGAAAGAGGACTGGTTGAAGCCGTGGTATTCGCAGACTTTTGGTCTCAATTTAACGAGCCATACAATCTCCTGTATTTCAAGAATGCCTTTCTTATTCTTCACTGTCAGCTAAGAAACCGAAGCAACGATGCTAAAAATACTCGAAACACGTTGGTAAAACAGTATTCCGCGCAAGGTATCTCTCCCACCGTCAGTTTTATCACACTGGACTGGTCGAAATCGTACAAATTCGACGAAATTGTCCAAGATGAAAATGTTTTCTGGACGTTGAATATTTCAAAGAGCGAACTACTCGAACATTGCAATGGAGCAAACAGCGGAAAAATCCCTTGGACTTTCAAAGTAGAACTTGGACAAGGCCTCAATTTGTTTGAATCTTGGGGGACTGTTGTACTACCAGATATGGAGCCTTTACTCTCTGTTGAACTCGGCGAGCGTATGACTGAAGACAATAAAATTCCTTCGCCAGTAGATGTTATTGTTTGGCAGCATCCTTGCAGTCCAGGAGTAGCAGTTTTGACTCCAGTTTTTGAAGCCGAGCAGTCTTTTACAGGAGGTTATCTGGCAGTCACTCACGGAAGTTTCTTACCAAATACAACTCACTGGTATGATCTTCTTCATCGATCTTCTGGCCACCCAGACAATTATTCTATCTGTAAGGAACTCTCATTTGCCAGTTGCGAGAAACTATCAATTTTGGACCTTACAGTGGTGGACAATTACCTTTTACTTGTAACTACGAAAGGTCTGATAAGGTCGGAATCAATGGATCAGGTTTTGAAAGAAGTCAACAAGACTCAGCTGAAGTTCTACAAAGTGGCGGACATCCATTCAACAGTTTATCAAGCTTTCAGAGATGGTATAGTAAATCGTGGCAGGATCAAGCTGTACCACACAGCTCAATGCGATGGACACGAGGTGTCATTCAAAGAACACATGGCACATTTGATTTACAAACCAGCTGAAAAGAAGCGTTCTATACTTCTTACAAGTGAACCTCCGTTTGAAAAGTGGACTTCATTCAACTTCCCTGACCCACTAAAGGAATTCTCAGTGCTTGGTATGGCTTGGGACATTCAAAGAAATACAATGGTTTTACTTATGAAGGACCCTAACAAGATTTGTTCCTTGATTGCAGTACTTGATCCACAGACCTCCAAACTCTTGCAACCCGTTTTCCGATTCCCAGGAAATGTAAGCTTTACAAAGATTACTTTCCACGCTCACACGCATGTTATCTTCGTCTATGGATCCCAGGTGTGGCTGTCACTTGATGGAGGGAACGCGTTTGTCAAGATGTTGGACACACACTTGCGAGGTGATTCAGTGTGGTCACTATTTGCTAACAGCCTAGGAGACGCCTTTGTTTTGGTTACAAGTCATGGCGCTGTGTACAGTGGTTGGTCGGGCATTCCACGAGTCAGTCAGATTGAACCAGCAACTTCAAATTCCAGCTGCTCCTACAAGATTGCTAACTTTCAGCATCAAATGTCCGTCAACTTAATTTGTATACAGAACACCTCTTCTCTGCTCACCTTTAAAACTTACAGCATCGATTTAGTTTCACGGATCCGAGCGGGTAGGGCTGTCTTTTTCAGACCACTTCTTGTAAATTTTGTGTCTGAATGGCAAGTAGAATTTTTGGCTTTTTGTGGCGACGCCTTTTTCTCAGATGCTATTGGATGTCCGGACTCGTTTCAGCAGTCTGATGTTGGACGTGTCCTGCGAACAAGAAATGGCGGTTCGGCTCTAATCACTAGAGTGGAGACGAATAAAGATACAAATGATTTTAGTGCACGTGTCACTGGTCTCATCATTAAACCAATTGCGCCCGTGGACAAATCGGACTCCCCTGCCCTCCAATACACTCTTTATGTAAACGTCACTGGTTCATTTGCTTATTTACAGCTGGAAAACTCAATGAACGATTCAGGCTGGGGAGGTGAAGACATTGGTAAAACAGTTTGCCTTTCCAGTGGAATAAGCGTTATTCTAACAGCTTGTAAAAGTCTTTCATCTGCTACAGGAAGGCTACCAGCATCATGGAACGATACTGGAACTTACGTCAGTGTTTTTAAGGAAGGTACTTGGTTTCTTATAGATTTACGTCCTTTTTATGCCTTTCGCCCTATGGGCTCTCCTGTACTCCGTGTACGCCAAACGGATATCGACAATGCTCAAATTGAGATAGTAAATGATGACCAGTTTGAATTCTCAGGCGAAAACGTTGGAGATGTTTTAAAATATGGGTATGTGTGGGGTTTGATTACATCTGTTGTAAAAGTCGCCTCCGTAGTCAGTACTACAATAAAGTCTGACAATTTGATGCCCGGGAACTATACGGACAACTGGGGTGTATACAAGGCAGAAGTTGGTACCGACTCGTACATCGCTTTCATTCCTAATCCTCAGTTTCAAGGCTGGTGGTTGACAGAAGAGGAGTGTCGGCATTTTCTTGTGGAAGAACCTCCTAGTAGACTCGAGCTTTACCATTTGGATTCCAGCGAGAGCCTTTCCTTCACCCTCCGCGCCATAAGTAAAGCGATTGCTGGTAAAAATCCTACAGAACCTCTGCTGAGAGTGTATATTGGTAACACCCTGTTATTTTATGTGGAGTCATCATATCAGAATTCCAACATGAATCACACCTTACATGTTACTTTAACGAAAAGACCCTTAATAAAAGGAATATCATCGATTTCGGTGAGATTACATCAAACTGCTTCTCTGTTATGCAAAGAGGCATCCTACACTGTGCATGGCGGCTGTCCACCGACTAAAAAGCTGCGTTTCCTATACCCTTTATCGTATTCTCTTGACAACTTTTTAAATGCGGAAGTCACCGACTCCAAAGGGATTGTGAGGAACTTCAAGCTACCTTTCAACTACAGAGCTCCCTCCCCGCGAGGTAAAGCAATACCGATGTCAAAGAACACTTACAATGTCGACCCACAGAAACCTCTTTACAAAACGAAATACGCTGTAACGCGAAGCACACTGCGATACAAGCAATGCAAAGGAAAACATCACCGCTCGGATTGTGGGTGTACTACTGAAATGAGAGGTTCATCTCTTGTTGAGTATTCAGACTGTATCAATACTGTATACCGCATGACTTTCAGTGAAACTCTCACTCCGCGCTTTGTTGTGTTACAAGAAGGTAGAGAAGAAGAACCGCTGCGCTTTCCGTTTTATCTCGAAGAACTGAATCAAAGGAAGGACTTCATAATACTCTCACCAAGTGACTTAACTTTCTCGGGTATATCGTCGCCGGTGCTAAAACAGGATCTAAACGGCTCTATACAGTTTGAGGGCTCGGGCTTGTATCACTTTCGTGCTCGTGTCGTGCAAGAGAATTACACATTCTGTTCCCTGTCGGACGAATTCCTGGTATTCGTTGTTGATACTCCTTTACCTTTTCCAGTAAATGATGTGGTACGTGCCTGCACTGGAATGGGATTCGCAAGTCTGCTATTTTTTGTTTATGCGCGATACTTTCATGGAAAGAAGAAGATGAAGAACGACTAG

Transcript

PcrG000592.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15149 all species →	CATSPERB	Cation channel sperm-associated protein subunit beta protein family	Family	Interproscan
PF21548 all species →	CATSPERB_2nd	CATSPER subunit beta protein 2nd domain	Domain	Interproscan
PF21541 all species →	CATSPERB_1st	CATSPER protein subunit beta protein 1st domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048789 all species →	Domain	Cation channel sperm-associated protein subunit beta, C-terminal domain	Interproscan
IPR048788 all species →	Domain	Cation channel sperm-associated auxiliary subunit beta, 2nd domain	Interproscan
IPR048786 all species →	Domain	Cation channel sperm-associated auxiliary subunit beta, first domain	Interproscan
IPR028748 all species →	Family	Cation channel sperm-associated auxiliary subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14705 all species →	CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0036128 all species →	Cellular Component	CatSper complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16893	CATSPERB; cation channel sperm-associated protein subunit beta	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.