Gene detail

Detailed information of PcrG000976.mRNA1 in Podabacia crustacea

Genomic Location: ptg000019l:1186981...1217857
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG000976.mRNA1

ATGGCGGACAAGGTAGCAGAGGAATCGAAGAATTTAAGGCTGAGATTGCAGTCATTTTTGAGTGGCAAGGATGCATCAGGCCAAATCTTATCCAATGTGGAGAAAACACAATGTGCCATTGTGTTATGGCATTCTCTTCCTTGTGCAAGACATGCTGTATTGGAACAACTCTGTGATGTGTTTCATGAAGCTGTTCAGAAGTATGTGGTGGAGTTAGAAAGACAGGCATTATCTGGAAGTACAAGCTATTATCCTGATTCTCTTGACCCAGAGTTGACAACAGCCTTGCAGAATGTTAGTGAAGTTGTTTGTAGATTTGTTGACAATAATCCCACTGCTTGGGCTCCTCTTATTTGCCAGTGGTCTTTAGATCTTCTTGGACAAGTTGTTACAAAAAATAATGGAAGAAGAGCTGCAAGTATCACAGTGTCACTCAGCGAGGGTCTTCATAAATGGATGTTATTTCCTGCTGTACAAAGATTAATGGATATTGCTGTCCACTGTAGTGCAAAATTGGTTGGCCGTGGCCAAGCTGATGTCTGTGTACAGTGCCTGCTTCAAATAGCCATGAACAGCTCTCCACATTTGGACTGGATTGTGGCTCATATTGGGTCTCGTTTCCATCAGGTTTTTATTCCAAAGCTGCTGTCCACAGCATTAAAAGAGTACACTGCAAGTCAATTCCCTGGGGGAGGAGGTGGAGATACTTCTGCAATGACCCCTACAGTTGTACATGTTCTAACATACCTATCTCTTCAACATTCTCAAGAGATCAAGAGCAATCTGTTGGCTTTGTTTCATGAAAGTTTAACCAACTCTTCAAAGTCTGATCTTGAGAGAGAGGAACAGCTTTGCACCCTTCCATTTCTTCTTCACATTGCCAGTTTGTCACCCAACTTATTAAAAGGAACTATAACAGAGTTCATTGATGTCTTGACTCCTGAAGTTCTTGTTCAATTGTTGGAGCAGTCTAAGAAAAGGGGAGAAAGGAAAATGAGCTTGGTGTCTTCAGTTGTGAATGTCATCAAAAACACAGGAGAAGGAGCACTTGATGTTTTCCAGTTTCTACTTGAAAACTGTCAGAAACCTGAAGATAGAGGTTTTATGGATTCTGATGTGACTCAAGCAGAATTGCAGAAAATATTTAGTCTTATAATGGGATTGCTGTTAAACAGACTTCAGGAAGTTGCTCTTCAGAGACACAACCTCTTCTACAAAAATACTTCCATGGCATCACTGGACACTAGCAAGACAGAGAGTGAATTTCTAACAGAAATGGCTGCTCATTCAAAAGATTTGTGCAAGTTACTATTGACGTCATGTGGCAACAAGATTGCAAATATTTTTCAAATGTTGGTCATCATAGCCATTCACAGTGGCAGAACATCAGCTGCAGGAATCCTCAAACTTGTCCTGATGAACAGCAGATCTTCACATTCTCTTCAGCTGTTTGTTCAACTTCATGATGAACTGGAACTGTTCTACACTCAGCTGCTGGATGATGTTGTCAAAACTTGTCTCTCTGCCATCAAATATCCTGGTGCTGCTTCAAGCTCAGTTCAGTTATTGCATTTGCTGAGTAATTTTCACCAACTAATTTGCTCTGACAGTGGCAGTCAACCTCTGTCTAGGTCAAAGTTGTGTGCGTCACTTCAGAGACATCACAGTGTATTCTCCAATCTGTTGATTCATGCAAATCTGGAAGTTTCTTTAAAGTCACTTGTGCTTCTTTTGTCCTTGGACAATACTCTGCCAGACAAAGTGTCAAACATGATGAAGATATGCAGTAACTGTGTCGGGCTATTCTACAAGTTGCTTCATAAACTGGAAAAACAAGATGGAAAAATGGCAGAAACAGTGAAGTCCATCAAACTTTGTAGGAAGATGTTTCTTCTTCTCTCCAGAGATGATAAATGCAGATTGTATTTATTGAGGCTATTGGTGGAAGGCACATTGCAAAAGGAGCATGTATCTTTGTTTGGTGGGATTTTACCAGTTGAACCATCTGATTCAGAAAAGGACTTGACAAACATCAAAGTTTCCTTGTTGGAGCGGAACAGAAATCCTCACATCTCGTCGCATCTTCCGCTCACTCCTTCCTCTGTGTTCTTCAGTGGAATTGTCGGCGACATTGACAAGAGCAACAGAACGAAAACAGTTGAAAAGACTGAGCCTCTAGCATGGCAGCAGACTAGCCAGGCGTTTGTAGATGTTGTGTTTATCCTGTGCACATGTGATCACGAAGATGCAGACCGCGGCACCGTAACTCTTCATCACAAATACGTTGATTCTTTAGCCCGGCTGTTAATGGAACTTGTTTGTCCTGATGTTGTTCCCATCACCTTCGATTGGCCTGATGACGAAACTCTCAAGTTTACAATAGAACGTGATTTACGAATAAAGAAAACCTTTGACGACAATCCCATCCTATGGGCGCTTGTGAACATTGTCGCTAGAGGTGTGTCATCACTGTCCAAGTGCAGTCCTTTGGTGTCCAGTTTATTAGCTACCATCATGTCCTACTGGGAGGTGTATCGAGGTTCATCAGTTGACCAATCAACGCTCATGTTTAAAGTCACGTGTTTTATAACTGACATTATGACAAAGGCAAGCTGGCTGCCTCCTCCTTTAAGTCGTGTTGGAGCTGTGTTTGGTCTCCTTCAGCCAAAAGAAATTTACACCTTACTTAACACAATGTGGAAAGTGCTCAAGGAGTTTCCTCCTCCGAGTTCCGCCATGACTCCGGAAGCTACGCGACAAAGATGGCAACAAGGCGCAGCCTTCAAGACTCAGAAAGAAGTAGTTAAAGCGATCTTTGTAAATAATATTGAACACCTCGGTCATCACTATGCTCGAGTGTTTGATGAATCTTGGTGA

Transcript

PcrG000976.mRNA1

GCAAGATGGCGGACAAGGTAGCAGAGGAATCGAAGAATTTAAGGCTGAGATTGCAGTCATTTTTGAGTGGCAAGGATGCATCAGGCCAAATCTTATCCAATGTGGAGAAAACACAATGTGCCATTGTGTTATGGCATTCTCTTCCTTGTGCAAGACATGCTGTATTGGAACAACTCTGTGATGTGTTTCATGAAGCTGTTCAGAAGTATGTGGTGGAGTTAGAAAGACAGGCATTATCTGGAAGTACAAGCTATTATCCTGATTCTCTTGACCCAGAGTTGACAACAGCCTTGCAGAATGTTAGTGAAGTTGTTTGTAGATTTGTTGACAATAATCCCACTGCTTGGGCTCCTCTTATTTGCCAGTGGTCTTTAGATCTTCTTGGACAAGTTGTTACAAAAAATAATGGAAGAAGAGCTGCAAGTATCACAGTGTCACTCAGCGAGGGTCTTCATAAATGGATGTTATTTCCTGCTGTACAAAGATTAATGGATATTGCTGTCCACTGTAGTGCAAAATTGGTTGGCCGTGGCCAAGCTGATGTCTGTGTACAGTGCCTGCTTCAAATAGCCATGAACAGCTCTCCACATTTGGACTGGATTGTGGCTCATATTGGGTCTCGTTTCCATCAGGTTTTTATTCCAAAGCTGCTGTCCACAGCATTAAAAGAGTACACTGCAAGTCAATTCCCTGGGGGAGGAGGTGGAGATACTTCTGCAATGACCCCTACAGTTGTACATGTTCTAACATACCTATCTCTTCAACATTCTCAAGAGATCAAGAGCAATCTGTTGGCTTTGTTTCATGAAAGTTTAACCAACTCTTCAAAGTCTGATCTTGAGAGAGAGGAACAGCTTTGCACCCTTCCATTTCTTCTTCACATTGCCAGTTTGTCACCCAACTTATTAAAAGGAACTATAACAGAGTTCATTGATGTCTTGACTCCTGAAGTTCTTGTTCAATTGTTGGAGCAGTCTAAGAAAAGGGGAGAAAGGAAAATGAGCTTGGTGTCTTCAGTTGTGAATGTCATCAAAAACACAGGAGAAGGAGCACTTGATGTTTTCCAGTTTCTACTTGAAAACTGTCAGAAACCTGAAGATAGAGGTTTTATGGATTCTGATGTGACTCAAGCAGAATTGCAGAAAATATTTAGTCTTATAATGGGATTGCTGTTAAACAGACTTCAGGAAGTTGCTCTTCAGAGACACAACCTCTTCTACAAAAATACTTCCATGGCATCACTGGACACTAGCAAGACAGAGAGTGAATTTCTAACAGAAATGGCTGCTCATTCAAAAGATTTGTGCAAGTTACTATTGACGTCATGTGGCAACAAGATTGCAAATATTTTTCAAATGTTGGTCATCATAGCCATTCACAGTGGCAGAACATCAGCTGCAGGAATCCTCAAACTTGTCCTGATGAACAGCAGATCTTCACATTCTCTTCAGCTGTTTGTTCAACTTCATGATGAACTGGAACTGTTCTACACTCAGCTGCTGGATGATGTTGTCAAAACTTGTCTCTCTGCCATCAAATATCCTGGTGCTGCTTCAAGCTCAGTTCAGTTATTGCATTTGCTGAGTAATTTTCACCAACTAATTTGCTCTGACAGTGGCAGTCAACCTCTGTCTAGGTCAAAGTTGTGTGCGTCACTTCAGAGACATCACAGTGTATTCTCCAATCTGTTGATTCATGCAAATCTGGAAGTTTCTTTAAAGTCACTTGTGCTTCTTTTGTCCTTGGACAATACTCTGCCAGACAAAGTGTCAAACATGATGAAGATATGCAGTAACTGTGTCGGGCTATTCTACAAGTTGCTTCATAAACTGGAAAAACAAGATGGAAAAATGGCAGAAACAGTGAAGTCCATCAAACTTTGTAGGAAGATGTTTCTTCTTCTCTCCAGAGATGATAAATGCAGATTGTATTTATTGAGGCTATTGGTGGAAGGCACATTGCAAAAGGAGCATGTATCTTTGTTTGGTGGGATTTTACCAGTTGAACCATCTGATTCAGAAAAGGACTTGACAAACATCAAAGTTTCCTTGTTGGAGCGGAACAGAAATCCTCACATCTCGTCGCATCTTCCGCTCACTCCTTCCTCTGTGTTCTTCAGTGGAATTGTCGGCGACATTGACAAGAGCAACAGAACGAAAACAGTTGAAAAGACTGAGCCTCTAGCATGGCAGCAGACTAGCCAGGCGTTTGTAGATGTTGTGTTTATCCTGTGCACATGTGATCACGAAGATGCAGACCGCGGCACCGTAACTCTTCATCACAAATACGTTGATTCTTTAGCCCGGCTGTTAATGGAACTTGTTTGTCCTGATGTTGTTCCCATCACCTTCGATTGGCCTGATGACGAAACTCTCAAGTTTACAATAGAACGTGATTTACGAATAAAGAAAACCTTTGACGACAATCCCATCCTATGGGCGCTTGTGAACATTGTCGCTAGAGGTGTGTCATCACTGTCCAAGTGCAGTCCTTTGGTGTCCAGTTTATTAGCTACCATCATGTCCTACTGGGAGGTGTATCGAGGTTCATCAGTTGACCAATCAACGCTCATGTTTAAAGTCACGTGTTTTATAACTGACATTATGACAAAGGCAAGCTGGCTGCCTCCTCCTTTAAGTCGTGTTGGAGCTGTGTTTGGTCTCCTTCAGCCAAAAGAAATTTACACCTTACTTAACACAATGTGGAAAGTGCTCAAGGAGTTTCCTCCTCCGAGTTCCGCCATGACTCCGGAAGCTACGCGACAAAGATGGCAACAAGGCGCAGCCTTCAAGACTCAGAAAGAAGTAGTTAAAGCGATCTTTGTAAATAATATTGAACACCTCGGTCATCACTATGCTCGAGTGTTTGATGAATCTTGGTGAATTAACAAACCAGTGTAAGAGATTGTTGATGTAAATAAATGTATAGCTGCCG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004015 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14838 all species →	INTS5_C	Integrator complex subunit 5 C-terminus	Family	Interproscan
PF14837 all species →	INTS5_N	Integrator complex subunit 5 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029444 all species →	Domain	Integrator complex subunit 5, C-terminal	Interproscan
IPR029445 all species →	Domain	Integrator complex subunit 5, N-terminal	Interproscan
IPR040316 all species →	Family	Integrator complex subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31697 all species →	INTEGRATOR COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13142	INTS5; integrator complex subunit 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.