Gene detail

Detailed information of PcrG002645.mRNA1 in Podabacia crustacea

Genomic Location: ptg000060l:2294492...2303236
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG002645.mRNA1

GTTTGGCACACTTTTGCAGCTGCATAATTTTATTGATTTGTTGGCTGTTTTCTTTTTGACACTCTCCAGTGTTGTCAGTAGCACATTCCTTGAGGAAATAGAAGATCTTCCTCATAACTCCGGCTGATTTTCTGAGAAGTAACGAATTATAAAAGCCGAGCAGACGAAGGTTCTCGTGACAATGCCGACTACAAATGGCGTCAGTGATGAAGGTGTGGAGGGTTATAAAAATGAAAATAGAGTCTACAAAGTCGTCTTAACTGGAGGTCCTTGTGCAGGAAAGACAACAGTTCAGGCAATGATGTCAACTTTTTTCGAAAATCTTGGTTGGAAGGTTTACAGAGTCCCTGAAGCTGCCACAGTATTACTAGGTGGTGGTGTCAAGTTCACAGATCTTGATGAGAAAGAAGTTTACACATTTCAAGAAAATCTTTTAAGGACCTTGTTGCAGTTAGAGAAGACATTTTTTGACTTAGCAGCAACTTCTAAGAAAAACACAATAGTGATATGTGACAGAGGAGCTATGGATCCATCATCATATATGAGTGCAACTGAGTGGGAAAAACTTCTTAACAATAACAACTGGAACAATGTGTCATTAAGGGATGCACGCTATGATCAAGTGATTCATCTGGTGTCAGCTGCACAGGGAGCAGAAGAGTTTTATACATTAGCAAACAACAAGTCACGGAAAGAACCAATAGAACTGGCAAGACAGTTGGACAGAAAAACACAACAGGCATGGGTCGGTCACCCATATGTGGATGTGATAGACAACTCTGTAGACTTTCACAAAAAAGTGCGAAGTGCCATTGATGCTGTTTGCAACAAGATGGGTATTGATCCTGGGGATCTATTTTCACCAGAAAGTGTCAAGCGCAAGTTCCTGATTTCATCTCTTCCAGATGTTAAGGCTTTTCCTGTATTTCAAGACTTTGATGTGGTTCATGATTACTTGTCGACTTCAAACCCCAAGAAGCAGTCGCGTCTTAGAAGAAGAGGACAGAATGGTCATTACACTTACATGCGTACTTTGCGAGAAGAAAGGGTCAATGGACAAATTGTAGAAGTCAGAACCAATTTATCAGAGAGACATTATGAGATATTGTATTCCCAACTTGATCAAACTCGACAATCTGTATACAAGACCAGGAGATGCTTCCTCTGGAAAAACCAGTATTTTCAACTGGATATTTATAATGAGCCTTGTCATCCAAGGTGTAAAGGACTCTTACTCCTTGAAACTTACACCACAAAAGTTGGAGATAACTTGGAGCTACCAGATTTCCTGGACATTGCAAAAGAAGTCACAGGAGATCCATTGTACTCTATGTTTCACTTATCTCTTAAAGAATAATGAGTGTCTATTGACTAATACTAAATAACTAATATTTATAGTTGTGTAATTCAATGAGTGGTTGTATGGTATTGTGAGTGATTTCAGGGCACAAAATCTTATTCCTTTTATTAACACTAACTCAAAAAAAATGAATATGGTTTACACAATTTTACATTTTATTTTGCACTTTTGAAATCTTTTAAGTTGTAAATTTAACGATGCATGGTTAACATATCACCAGATGTACAAAACTCTTACCAAAAACAGATTTTTACTGTTGAATTATGTAAATTTGTTTATGCATACATGGAAAATTCTATTTGCATGCGTGTGGATGAACTGCACGGAAATAACCCAGAGTGGGTTACAGAATAAAGCCATTtacagtggaaccttgatataacaaaggggaaatctgggactggcaaaatatgtttgttataatgagttttcattattcatgaaggttctattccatataaTACTGAGAGGCTCATTTAATCAAGGTCCTACTATAATAAGCTGATCCAAGAGTCCGATACTGGTGATCTAGACGAAATTATCTGAAATTGTATGTGCAATGATTATTTCCTGGTCATTGTAGTAAAACCATGAAAATAAGTCCTCACCTCCAAAATGCTTCTTAGAAAGATCTGCTCTAGTTCATTTTTCTTTACTAAAACAACTAGGATTTTAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13521 all species →	AAA_28	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038727 all species →	Domain	NadR/Ttd14, AAA domain	Interproscan
IPR053227 all species →	Family	TRPL channel trafficking regulator	Interproscan
IPR033469 all species →	Homologous_superfamily	CYTH-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34932 all species →	TRPL TRANSLOCATION DEFECT PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0070300 all species →	Molecular Function	phosphatidic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00939	adk, AK; adenylate kinase	EC:2.7.4.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.