Gene detail

Detailed information of PcrG002880.mRNA1 in Podabacia crustacea

Genomic Location: ptg000064l:1538800...1559667
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG002880.mRNA1

ATATAAATGGCGGCAAAACAGTTGTTGTGGTGAATTACTCACTTGTCAGAATTTATTTACATTATTCTTTCTTATTAACGAGTGAATGGTTTCATTTTGTACCGATATACAGCGCTGAGGGAATATGCAGTTTGACGTTAGAAGATTTGATGTTTACAGAAAAGTACCCAAGGATTTAACTGAACCTACACTGACAGGAGCAGTTATTTCCATATGCAGTTGCCTTTTTATAGTGTTTTTGTTGCTATCAGAATTTTACAGCTTTATAAACACAGAACTTGTTAGTGAGTTGTTTGTGGATAATCCAACAGAAAATGACCGACTAGGAGTCAAAATGAATGTAACCTTGCCAAGAATGAAATGTGAACATCTTGGCCTGGATATACAGGATGAAATGGGAAGACATGAGGTTGGTTTTCAAGAGAATACCCACAAAGAGGAAATAAATCATGGAGAAGGATGTCTGTTCTCTTGCAAGTTCAACATTAACAAGGTTCCTGGAAATTTCCATGTGTCCACCCATGGAGCAGGTGCACAGCCAGATAATCCGGACATGGCCCATATTATTAACTCTCTTAACTTTGGAACAGAAATTAAGGATAAACTTCCAGGTGCTTTTGTGGCACTTAAGGGACGGGATAAAGAAAGTGCCAACAGTTTGTCTTCCCATGATTATGTGTTAAAGATTGTACCCACTATCTATGAGAAGCTAGATGGAAGCACAACCTTCACCTATCAGTATACTTGGGCTTATAAGGATTATGTAGCCTATGGGCATGGAGGTCGGATTTTACCAGCCATTTGGTTTCGGTATGATTTGAGTCCTATTACTGTCAAATATGTGGAGAGACGCAAGCCGCTCTATCATTTCATCACCACGGTGTGTGCAATCGTTGGTGGTACCTTTACTGTGGCGGGAATTATTGATTCGATGATCTTCACGGCCAGCGAATTGTTTAAAAAAGCTCAGCTTGGGAAGCTTAGCTAATTCTGCATCGTAAAATGACAAAAATAACAATATATAATGACAAAAAATAACAATAATAACAAAAATCCATCCACTCGCAGGGTTTTTTGGCATTGAATTATTGTTGTTTTGTAATTTTGTATTGTTTTGCAAAGGTAACTTACTTTGCGTGTTTTAAACACTTAAGCTGTTTTGAATGTGACAGGTCGTTTTAGATTTTTATGTCATTTGTATTTGGGACTTCTAGAGAAGACGGTTATATTATTAACACAGAATTAGAGAGCCTTGGtagcctgggaccaggctccttggtagggaagggtgcgaaaaaaaaatattggcgagcgaggcgagccgggtgggagactggggaggagaaggtgcacgccttctcctttcggctccctCACCGGCAACATTCGCCACCAAGAAGCCTGGTTCCAGGCTAGTGCCAAGGAAACTGTTTCGATTCAAGTACATAAGTTTTGGTTTTAAATAGAAACTGTTAGTATGCGTAAAATACCAGACTTGCGGTGAATAAAATTGATGATAGATGTAATTCCATCTCCGTAGTTTGTTTTTCATGTTTTGAATCTTTCTGTTTTTGTGTAGTCTCGTTGAAGTCTTGAAATTATTTTAAGATTTTTAGAACCAATTTAAATAGAGTCGAACCTCTTTGATAAGGGCACGAAAGGGACAGAGCCGAGAGTTCGTATTCTACACTGAGGTATCGCGCGCAAAATGTCCTGGCGTGTTCTGTTTCCTTGGGAGTTTCTGACCCTTCAGTTGAGGCCGTtcttttataaactcaagcgtaaaggacgtaaacaagtaaaagtagagagcttaagcacggacggcaattcaaccggaaggcaattgttaatgtttttcgcgcattctcagctactcgaatgagttgcaaagccctcgttttctcgtttgtaacttaatgttacgggcaaaaagtcgataacgcatTAATGACCATTTGGCCaaaaggaagttgttattgctttaatttgttataagatattgactgtcatttatggaaaataataaaatactg

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007136 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13850 all species →	ERGIC_N	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	Domain	Interproscan
PF07970 all species →	COPIIcoated_ERV	Endoplasmic reticulum vesicle transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039542 all species →	Domain	Endoplasmic reticulum vesicle transporter, N-terminal	Interproscan
IPR012936 all species →	Domain	Endoplasmic reticulum vesicle transporter, C-terminal	Interproscan
IPR045888 all species →	Family	Endoplasmic reticulum vesicle transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10984 all species →	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for PcrG002880.mRNA1 in Podabacia crustacea.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20365	ERGIC1; endoplasmic reticulum-Golgi intermediate compartment protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.