Gene detail

Detailed information of PcrG003166.mRNA1 in Podabacia crustacea

Genomic Location: ptg000067l:3141365...3144211
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG003166.mRNA1

atgcaagagtgtgccaagagttttcattttaaaagtcacctaaaacggcacgaaagaaggcacacaggagagaaaccttatcaatgcagcttctgcaggaagagttttaatgaggcaagaaacctaaaacaacatgaaagaacacacacgggagagaaaccttttgaatgtaaccattgtggtaagcattttaatcaagcaggacatttaaaggaccatgaaagatctcacactggagagaagccttttgaatgtaaccagtgtggcaagtgttttaatcaagcaggacatttaaaggaacataagagaacacactcagaggagaagccatttgaatgtaatcagtgtggcaagtgctttaaaaggaaagaaactttagagcagcataaaaggacgcacatgggagagaagccttttggatgtaaccagtgtggcaagtgttttagtcgagcaggaactttaaaggaacataaaaaaacacacacaggagagaagccttttgaatgtaaccagtgtggcaagtgttttagtcgaggaggaactttaagggaccatgaaagaacacacacaggagggaagccttatgaatgtaaccagtgtggcaagtgttttagtcaagcaggaactttaagggagcataaaagaacacacacaggagagaagccttttgaatgttaccagtgtggcaagtgttttagtcgagcaggatatttaaaggagcataaaagaacacacactggagagaagccttttgaatgtaaacaatgcggcaagtgttttaaccaagcaggaactttaaagcaacatgaaagaatacacacaagagaaaagccttatgaatgtaaccaatgtggcaagtgttttagtcgagcaggaactttaagggagcatgaaagaacacacacaggagggaagccttttgaatgtaaccagtgtggcaagtgttttagtcgagcaggatatttaaaggaacataagagaatacacaccggagagaagccttttgaatgtaaacaatgtggcaagtgttttaagcaagcaggaactttaaagccacatgaaagaatacacacaggagaaaagccttatgaatgtaaatggtgtggaaagtgttttaaccgagcaggaactttgatgaaacatgagagaatacacacaggagaaaagccttatgaatgtacccaatgtggaaagtgttttaaccaagcaggaactttaaagcaacatgaaagaatacacacaagagaaaagccttctgaatgtacccaatgtggaaagtgttttagtcgagcaggaaatttaaagaaacatgaaagaacacacacaggagagaagccctttgaatgcaaccagtgtggcaagtgttttaatttagtccaaagcttaaatatgcatacaagaacacaTCATGTTGACTATTCTTCGAAAATTAAAGAAAACCAGCAGAGTCAGGTTTGTAACCAGAAAGAGGATCTTGAGGAAGATCATGTAACATGCAGCACAGTAGCAATGTGTAGGAATGATAAACATGACCGTGTCTTCAGCATTGCTGACCTTTTAACCAACCTAAAAGAAATCAAAAAGGAGCAGACTGAATAGTACAGTATTACTGTGTGCCATTTGACCAATATTTTTTGCAGTAGTGAAAGACATACCTGAAAAATGATAATGATGAATAGACCAATATATCTGAGGAAGTCTATAATAAAGTTTAAACTGATTGGAAAATATACTGCATGCAACAGTGAGAGAGAATGAAAGTGAGGTGTGCAAGTGTGGATGGGAGATTTGACAGCATTGTCTGCCCTTGGTGTGAACTAAAATTAATAATCATTGGTTTATTAAATCACATGTCATTGCACATATCACCTTTGAATCATTTTAATGTTTCATCTTGCAAAGGTTCCTTGATGTTTAGTGACTTTTTCCATCATCCACAAGTGCTCTGTGGTAGTGCATTTGATTGTCTCTTAGATACCTGGCACACCCCCCCCCCTCCCCCTGTATTCACATTTTGTTTCTAACAAAAAAAAGTTATAATATACACAAAATTAACACGACTAGCCGTGTTTGATGCTCATGCATTGGAAATGTTCAGCATTTTGTTGTAAATAAACTATTCCTGTTGAGGAGTACTGGTTAGCATAAATGTTAAAAGTTAAACCAAAAAAATTGAGTAGCAATTGCCATCGAAattgtgtggtcccagaaaataatattatttttagtcataccccaatcatagtggatcattggaaattccgaggttgaggagaggctTTTTTTAAGAACCCTTCTTGGCCTTAAAAAAATAACAATTTTTTTTAAAAAATGTTAGAACCTTAACTGGAATTTTGATTTGAATTTTGAGaccaaaaacttcatctacctggtgaggaatactagcctgaaatggtcaaatacaagttgtctttgttctaatctcaggttgccatggcaacagatcttgacctcatttggaAATTGATTAAAGTGCTAATTTTTCATTAAAAAAAAGCTTTTTTTTGCGTGCACCACTTGTCTGGCTCTTATAGAATCTTCATAACTGGACAGTGTTTATTACATGCTTGTGTTTGATATGATAACTTTTAGGCTGGGAGCTTGCTCATTTCCTTTACAGAAAGCACAGTGGGTTATTAAACAGTAGTTTCTTATTTTTAGATACAGCTTACAATTTACAAGTATTAGATTAATAGTGCAGGGACCATGCAGGGGAAGGGGCTGCAGGGGGGCagtgcagaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13894 all species →	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF12800 all species →	Fer4_4	4Fe-4S binding domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24390 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.