Gene detail

Detailed information of PcrG003489.mRNA1 in Podabacia crustacea

Genomic Location: ptg000077l:346784...366646
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG003489.mRNA1

ATGATGCAGATATCGGTGAAGACACTAGATTCACAGACAAAAGTTTTCAATGTCCCCGAAGAGAGTACCGTGAAGGAATTCAAGGAACAAATCGCCTCCGATGTTAATATACCGGCTGATAAACAAAGACTTATTTTTAAAGGCAAGGTTTTACAGGATGACAAGAAGCTCTCAGAGTATGGAGCTGATGGCTGTGTGATTCACCTTGTTGAAAGAAAACCCACAGTTCCTGGTGCTCAAGATGGTGCTAATGGCTCTTCAAGTACTTCTACCAGTTCATCTTCTACAGGAGGGGCTACTTTCGGAATGGGTCCTAACATTGTCATGGGAGCATTTTCCATGCCAGTGGATGTAGTTGGAGCTACTCAGCAAATAGTTCAGAGTCTTGTCAATCAACTAGGAGTTGATTCAGCCCAAGCTAACATCAGCACCACACAATCGGATGATGGATCTTCTGTTAATGTTCATATTAACCTTCAAGCAACAACTCAGCCTGGTAATGATGTGTCACAGCGAATCAACAGGGCCAGGCATTTCATGAGGGCTGCTGCCTCATGTCTGAACAGGACTGAGGGTGAAGGTGTTCTTCCCATGGAGACCTCAGACACACCCAGTGATGAAAACACCAGTCAAACTCAAGGAACTTCCACAGAAACTGGGAGCCAGACTTCAACCCTTGCTAGTCCAACAGCCCTGGCTCAGATATTAAGGGAAGCAAGAGACTCGATGACTTCTATGCAAACAGCGCTCGACAGATATGCTTCACTTCTGGACACTAACACACCTGAGAAGTTAGGTCCATCTGAAGACACCTTACCTGACCGGGTAGCTGAGTCATTTCACAATCTTAGCCATGCTTACCATGCTCTGTCAGATCTGACATTTAATTTCCGTGGCCCAGAGCCTAGGAGGCCAAGTGTTCTGACAACTCTGTCGCCACACATGCCGTCAGTACCCATGCTGTCCAGCTTTGTGGGCGCACCTCAAATGATACGGCCCCAACCAGCTCAGCAACCTCCTGCAAGTTCAACAGCACCACAGACAACCCAGGCAACACCAGGTACACCACAGGTGCCTCTGGGGACTAACCAGAACTTAAGAATCCACGTTAATCCTCAAGGTGGAATCTCATTTACTACCATAATATCAAATGCATCATCACACACAGGCACTGCAGCACCAGGTAATACTCAGTCCACACCATCTACAACATCTACAAGTGGAACAAGAATGAGTGCAAGTGCAGACAATGGTGCTGCACGAGAGACTTTTTCAAGCTCTTTTGGGGAGCAGCGCTCCTCAGTGGGTACTAACACAAATGGTAGCAGCACCAGTACATCTACCCAGACTTCACAGCCTGGTGTACGGACTCGTATTATAGTTGATGATTTTATTGCATTAATTTCAAATGTTCCAGCTTCTATGgctgcagctgctgctgctgcACAGGGTCAAATGCCACCAGGGATGCCTGGGGCTCAGAATCTGTCCCAGACTCAAGGACAAGGAACAGCAACAGATACCACTACAACTCAGGCACAACCACAAGCCCAGTCAGTGCCCACAGCTGGAGTACAGAGTGCTGCACCAGGGCAGGATCAAGCCAGGCCTCAGGGACTACCAGTTGGACTGTCTATGAACGTTCTTTCTGGTATGCCCACAGCGAACACAACAAATCACCCAGACCCGTCTTTGCCTTGTCAGTCCTTTCATTTTGGACCACAAGGGCAGCGTGCTCAGCCAGAGCAGACCAGCCAACAGTCCACCCAATccactaccagtacaacaaccagtacaagtacccaggcacagactccagtgaccagtGCAGCGCAGAGTCAAACTCAGGAAAGTAGTGAACAGGCTGCCAACCCTGCTAATCCACCACCAGCACAGGAGaggccaagaccaccaccagaaccaagaacaagaGCCCGTGAGCGTTATATATCTCCAGCTGATTTACAAGGGATTTTGGGAATGATGGCACATGATGCACGTACAGGTACCAGAGGGTTTCCACCATTTTTTCCCAGGGGCCTCAGTCGAGGAGCCGGTAGACAGTCATCTGGCCCAATGAGTGCATCAGAAACAAGAAGATCAATGATGGATTTCCTGGATTCTGTCATGTCAGACATTCACAGCCACAGTGAAGGAGGAGGTCAGACACAGACAATTAACTCTCTGATCCAAACCATGAGATCAAGTGGACTGGATATACAAGATGAAGAAGGATTGGTGCCGGCCCTGTATCAGCGTTTGAGTGCTGTCATGACGATCGAGGATGTCATGGGCGTGGTTATGGGTTCAGAGAGACCATTTGAGCGAATGCAACCAGCTCTGATGTTATACGTAAAGGAGGATCTTTTACAAGGAAAAGAAGCCACCCATGAAAACATTAATAAAGCAGTGGAAGAACTGACCAAAGAGATTGTCGATGGAATTGCTGATTCCTTAAAAAGTGTTCCTACAAAAGATAACATTGATATCGTCCAATCAGCACAGAGTTTCCTTGAGCATTACATCGGAAATGCAGTCAGCTTGGTTTTACATTCGGAAGACAACCCGAGATTTGCCGAGTACTTCCAAGGTCACATGAAGGACATAGCTTCAGAATTCTTTACACTGTTGGTGTTCTGCTACAGGGATGGATTTGATGGAGTGGAGCAAGTTGTCAGGAATAGAATGCCACAGTCAACCTTAACAGCCGACATGGATGAACAATCGCGAGAGATGTTTGCTCAACTGCTGCTCAGGAATATCCGTCAGATGTACTACAGCAGGGCTTACTGTGAGGGAAGACTGCAGCGATTTATGATACGTGCTCAACCACCCCAGCCTCCCTCACAAGAACAAGAATCTCCACAGCCACCACCTTATTCAGAGACACAAGCGACTGCCAGGCCCACGGTCGAGGAAAAAACTGCCGTCGATGGGCGGGTTGATGGGCAGGATATAGACGACGAAATGGATAGTCATGGTTCTGATGACTCGGAGAACTTTGCAACTCCCCCCGGATCTGTTACAGCAGGCAATGATTCAGACAGGCTGCAGACGGAGTGTCCGGAGGGAGACGAGGCTATGGAGGATGATAGCAAGGATAATGATTGGAAGTCTATCATGCCCGAGGAGTGGATTCCTGTCATCACAACAGATATTGTACGGCAGAGAAGAATGCCAACCCAGGCACCTTTCAGTGATGCTTACATAAACGGACTACCGCCCAAGAGGCGTAAGATGGTAGACCAGCGAGGCGTTACTCCAAGTGAAGACAGCATTGGTGATGCTCTGAAGCAGGCAGCTGCAGCCACAGGAGCCACACCCCTTACCAGCCTGGAAGATCTTTCCAAAGCCGCCAAGGGAAATCGTAAACTCCACGGAGCGTACCGCAGAGAGATTAAAAAAGAAGTCAAGACAAGACTGGAAAAAGACACGGACTACAGACCTGATCGATTTCCTCAGACTAGAGACTATTTTGATAAAGACACGCAGAGGGAGTAG

Transcript

PcrG003489.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004988 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20960 all species →	Bag6_BAGS	Bag6, BAG-similar domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF12057 all species →	BAG6	BCL2-associated athanogene 6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR048926 all species →	Domain	Bag6, BAG-similar domain	Interproscan
IPR021925 all species →	Domain	Large proline-rich protein BAG6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15204 all species →	LARGE PROLINE-RICH PROTEIN BAG6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23390	BAG6; large proline-rich protein BAG6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.