Gene detail

Detailed information of PcrG003597.mRNA1 in Podabacia crustacea

Genomic Location: ptg000084l:586257...600576
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG003597.mRNA1

GCGAAGTTTTCGATGGACTTTCTTCTTGCTGAAATCGAGCGAAAAAAGAAACAGATCGATCAAAATGAAGTTACATCGAATAAAAAATACTTCCGACGCGGTGACCTAGCAGCCAAACAAGCAGAGGAATATAAAAAGAAGCAAGAGGAAAAACTCAAGGAAAAAGAGGAAAAGACTGGAAAAAGGGAGGCAGAGGATGATATATTTTCTGCATTCAAAAGAAAGAAAAATGAAGGTGAATCAAAGTCAGCAATGATCCCAAGAGAAGAGGTAATTCGAAGACTGAGAGAAAGAGGAGAACCAATCAGATTGTTTGGTGAAAGTGACGAGGAGGCTTGTCAGAGACTAAGGAGAATTGAGATGCTTGCTCCGGAGATAAACAAGGGTCTCAGGAATGACTTCAAAGCAGCAATGGAAAAGATCGATCAGGAATATTTAGCAGAGTTAATCAAACAACAGGGTGGTGAGCAACAAAGTTCAGAAAGCGAAGAGTCCTCACAAATTGAAGAGGATGGAACAACACTGGAAGACATCAAGGACTTGGCAAAAAATATGGGCAAAGGAGATGAAAGCCTTGATCAAGATGTCATCTTAAAGTTTGTACAGTTTCTTCTTGGAATATGGGGAAAGGATTTAAAAACAAGATCGGATGACAGTAAAAGAAGTTTAGAGGCTAAATTGGCAGGTGCTACTCAAAGACAGACAGAATCCTATCTAAAGCCATTATTGAGAAAACTTAAACATAAGAAAACACCTCGTGATATTCTTGGTTCCTTGACAAGTATCATCATGAGTCTTCTAGAAAGGGAGTATGTTAAGGCAAATGATGCTTATCTCCAAAtggcaatagggaatgctccttggcccattggagtgactatggtggggattcacgctcgaacaggaagagaaaaaatctttgcacagaatgtggctcATGTTCTTAATGATGAAACTCAAAGAAAGTATATTCAGGGGTTAAAACGTCTGATGACCTTTTGCCAAAAGAAGTTTCCTGCTGATCCATCAAAGTCTGTGGAATACAATGCTGTAAAGTGATTGACCAAAGAAACACAAAAAGCGTTAATAAGAAGAGATCTGAGGGCTTGCCAAGTGAACTGTATGGTCTACAACAAAACTCCTTTGAGAGGGCAGTGTGTCTGAAACATTCATACACCATTCTGATCTAACTGTTGGTGTGACTAGTAGATGCAAACAACTCGGGATTGCAGTCTATAAACGGTGTCTTTATTGAAGGATGAACAGTATGATTAGAGTTAGGCCTGGTTCACATGACTATCATGCAACATAATGGCTCAACACTGCAAGAGGGGAACTATGATCATGACTGCAAGAGGGATACCACTACGTAAAGAGACTTGTTTCACACATACAAGAAGGAATTTCCTGTTATTTTAGTGTTGCAAAACATTTTCTGTCtttctatttaacaattagactacaagactgaaatagtcaacgaggcatagccaagttgactatcgctcttagaaaacgagggcgagtacgtagtctaattgttttagtagaaactctaaaggattgcagtccaaaacctacgctattgtgcacttttaagacagaaatcaagaaaattttatcgcttaaagagctacgcgcatgtgactgttttttatctgcaaatagaaaacagtgagggaaccaatcagattccctcttcatctttggctgagtttctactaaTAACTTTTAGTataaagctactaactttctgtcaggaatgctgttctctgattggctacactgctcactatctatccttcagtaggacgtgtagcagttgtcgacaaaatgatggacacttattgcatttgtgagttgttttcagtgtctttgaagaaaatGTAGATAGCCTTACTAAATCAGATTGTGTGAGTCAGTAGgtgcacgagtgacgtcatgactcagccaaacaaacttcaagactcagacaaagaaaccgaaatggcggacgattgctttcttcaaaagcgtagccttcagtattccaaaaccacgcttttgaaaccaaaactttacctacattccctatttctctcagaacacgcttatgttgtctgagccttgtcaggtttcagtaatttg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08799 all species →	PRP4	pre-mRNA processing factor 4 (PRP4) like	Domain	Interproscan
PF02840 all species →	Prp18	Prp18 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014906 all species →	Domain	Pre-mRNA processing factor 4 (PRP4)-like	Interproscan
IPR039979 all species →	Family	Pre-mRNA-splicing factor 18	Interproscan
IPR036285 all species →	Homologous_superfamily	PRP4-like superfamily	Interproscan
IPR004098 all species →	Domain	Prp18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13007 all species →	PRE-MRNA SPLICING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000350 all species →	Biological Process	generation of catalytic spliceosome for second transesterification step	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071021 all species →	Cellular Component	U2-type post-spliceosomal complex	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12817	PRPF18, PRP18; pre-mRNA-splicing factor 18	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.