Gene detail

Detailed information of PcrG003779.mRNA1 in Podabacia crustacea

Genomic Location: ptg000092l:3113097...3144348
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG003779.mRNA1

ATGAGTTTAGCGAAGAGAGCAAAGCTCGATGTACCGGCGAGCGAAATGGTCAATGAAAAGCTACAAAATGGCTACCACTCGGATTGCTGTAACGGAGTCGAAGAGGAAACCGAAGCAGGCGGGCTTTCCACTCAAGAGATAATGGCACTACGAGAAAAGCATATTGGATCAGAGGCAAATGATCTTGCTCTTAGAATAGCAAGACAACATACAAATGCAGAGGATATTATCGTTGTGGACAGAGCATACCATGGTCACACCACAGCATTAATTGACATTAGTCCCAACAAGTTCAGATACTTGGGTGAAAAAGGAAAGAAGGATTATATTCATGTTGCTCCTACTCCTGATCTGTACCGTGGCATATTCCAAGGTGACCCCACACCTGAACTGGGAGAGAAATATGCCTTGGAAGTTAAGAAACTTATTGATCAAGCGCACAAGGAAGGAAGAAAGATTGCAGCTTTTATCAGCGAGTCAATGCAGGGTTGTGGTGGCCAGATTGTTTATCCTCCCAACTACTTGAAACAAGTCTACAAGTATGTCCGAGAGGCAGGAGGGGTGTGTATTGCTGATGAAGTGCAAGTTGGATTTGGACGAGCTGGAAAGCACTTCTGGGCATTTGAATCCCAAGGTGTTGTACCTGACATTGTAACGCTGGCGAAGTCCATTGGAAATGGGCACCCTTTGGCCGTTGTCGTATCGACACCTGAACTGGCGGAATCATTTGCTGCCACAGGCATGCCATATTTCAATACATACGGAGGTAACCCAGTATCCTGTGCTGTGGGGAATGCAGTTCTTGATATAATTGAGAAAGAAAATCTACAACAACACGCTCTTGAAATTGGTGACTACCTAAAAGGAAAGCTTCTACAGCTTCAAACCAAGCACAGGCTTATTGGACATGTCAGGGGTATGGGACTGTACATTGGAGTTGAGCTGGTGACCGATCGAACGACAAAGGAACCAGCCATAGAGGAAACAGGAAGAGTTGTGTACAAGGCAAAACAGAAGTTTGTTCTGATATCTCTTGATGGACCAGACGCCAATGTAATAAAAATCAAGCCTCCAATGTGTTTTACAAAAAAGGACGCCGATTTACTATGTTCAGTATTGGACGAGGCGCTTACAAATGTGGAGGAATGTCAGTGAATGATAGGAATCAAAACACAGTAAAACATTGAACAAGTCGTGAATCACTGCTCAGTAGGCAATCAACATTAATTTATTTATTCCAAACTGAATCTCCTAGGAGTGACTTGTTAGTAGAGAGTGGGAAATTAATTGCTGTATTTTTATATGTACAAACGACTGTAAAGTACAATAGGTCGAGTTAAATGATGGGCTAAATAaattttggactaccattcaaggcattccgtatatcttgagaactttacgtttggggctaaacaaagtagtctcaccattttcatcccaacctaaatttctgcaattaatattttctggtaagtagtaaaaagcaaccgtcccgcgcattttcctctccccagtctcctacctgccagcggtcacgaaagagcacgatagagatctctgcggaggagaGGTTTACGTGAGCGTttatcgccgccatgttggttaacttaacaaaagatttcaaataataagcttgctttgttaattcaatcaacatggccagcacgccattgacattGCTCATAATACACGTGGGCGTTCACGGGAAAAATCCTGTCCAACGGTTACGTTAGCCAATCGGAGCGCGCATCATATGCATTAACATGCTCTGACGTAATCAAGTATTATTTAAGAATTGCCACTTATTCTACAGCCTGTTTAATAAAAGGTGATTAAAAAAAAAAGTAAAAAAGGCATACAATTAAAGAAACGATGAGCTTGTTTTACTACTGAGTTCAAAACGGAGATTGAACGTCAGGTGCTATACCTTCGGAAGACTAGGTCTCAGTATTATTCTTACTATTCTTACTGGCACACCCTGAGCATGCGCGTGCAAGTCCTCTTTGGCGTTACCAAACATAAAATGAACTGTGTCACATTACAAAATTACCCATCTAGCTTAGTCGTTCAGTGTAGGAACCAACTCTTAGCTTCATAGTCTTTCGTAAAAAGAGGAACTTTGGTGTTGGTCAGCAGGTCGTACGACATGTCCACAGTCTTGTATCCCATCAGACTCATCACGCGCCGACAGTAATGTTCAATAATGTCGATGTCGTGCGGATGTACGTTCTTTCTCCAGCGATTTACCCCCTGCCACCCATTATCTTTGGTGCATGTGACTAACACTCCGTCAAACCGTCGATTACAGGCTCTTCTACTGAGGTGCGTGGTTTGGTTCAGCCATTTGCGCACACTCGTAAGCACAGGTAACCCAGCAAACTTGAAAATGTCCTCTAGCGCTTTAAGCGGTTCTATCGCTAGGTCCTCGTATCGTAAAAGTTTGACTCGCTCCTTTAGTGAATCCGGTAATTTTCTGACAAGCTCTAAGTTTTCTTCTGTTTGCTTACACTTTTCATAGCTGTAGAGCCGCGTGCCCCATTGAGCGTTTGTGGGGAGTCCAGGCGGCTCTCGGAAGAAGTTGGCGGTTTTTGAGGACGGGATCATGGCTCGCGGATCCCTCACTAGAAAGATAACCTTGCAATCTATATCCTCTGCGCTGCACGCAGTCAAGATGGTTTTGATGCTATTCTCAGGAATGCGCCACATTAGTATCTTTAACACCGTCAAGTCGTAGTTGTCTTTACAAGCACTTCCCAAGACCTC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001431 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45688 all species →	ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14286	AGXT2L1, ETNPPL; ethanolamine-phosphate phospho-lyase	EC:4.2.3.2	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.