Gene detail

Detailed information of PcrG003785.mRNA1 in Podabacia crustacea

Genomic Location: ptg000092l:3342298...3351277
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG003785.mRNA1

aaacacagaaaacacaaatcattttttccacagctattacattttctgcaagctgtaattttggtgattcgctgattttcttcacaaaatggggcagattcaatttcgtggtgaacaaggtcaaaaccaaggttcaatctctgcttaatcattgaggtaagatattctttgtatattttttcacgaagctcggctgggaggttttgaatagcctctgtaattgagccgttaaacatattttgtaagacagctttcgatacggttagagaataatgtgagaaaaaaataattaattttttattatgacagtatgcgaatctctaatttgttgtcaaaagtgaacccgcagagggaaataaccgctcgcttggcaatgtgtcgtgctcttttgtttgcgctttcgctctcactgttgtcgacgtccattataccttcctcagtagtatattcggcgttcgacaaatacacacctgatgttcagacattttttttccccttttaatctttaacatacgaagtatgttattgttaaaaggggaaaaaatgtctgaacatcaggtggtatttgtcgaacgccgaatatgaagacaccagaatcacccggctggtccttgtcgctgattggtcagaaaaatatttttctggccaatcaaaaaaaagaaatttaaattcttctggaagtggttaagaatgtgtccccaggggctgtatcgccgttcttgtaaactttcgttcgcaccgatttcgccgctttgtttattttatttcgtcccaactatccgcccctgggtctccgaggatgCTTGCTGGCAGGCTGGCTGAACGTTTTTTTAATTCTGTAATGAACTCGAAATCCACTTCACTGCTTATTCGGCTTCCCTTGTGTTTGAGGAAATCATCTTCCTGCGGCAAATTCGTACATCGTTGGATATCAGACATGACCAGCCCAAGCAGACAATCCCCAGCTATCTCGGTCAGCCCTCGTTCTTCACTTATGGACCGTCAGGTCAAGATATGCGTATCAGGACTTGAAGCCGGACAACCCGTTACTTTGCACGCTTTGGTGGTAGGTGATGCTGATGAGATATTCGAATCTCATGCACATTACGTTGCCAACAGTGAAGGAAAGATTGATAATTCATGTGACACTTCTTATGGTGGATCTTTCACTGGCTGTGAACAGATGGGGTTCCTGTGGAGTATGACGCAAGCACCCGGCCAGAGAAAAGGGCTTCGACTTTCAAAGAAAGATGTCACCAAGCCTTATAACATTCAGCTGAATTGCTTTGATGGACATCTGTCACCAGAGGAGGGGTTTGTGAATGCTTTAAAAAAGAGCAATTTACAACTCATTGCAAGTTCATCACTAGAGAAGTCGTACATGGCTGATGGAGTGCAGAGACTTCCTGTTAGGGAGGGGAGGGTGCGTGGAACGTTGTTCTTACCTCCTGGAAATGGACCATTTCCAGGTATCATTGATCTGTTTGGAATAGCAGGGGGCTTGACCGAATTCAAAGCTTCGCTCCTTGCATCACATGGATTTGCAGCACTCTCCCTGGCATACTTTGCATATGACGACCTGCCCAAGAACTTGCCTTACTGTGACCTGGAGTATTTTGAGGAAGCAGCAGACTGGTTTGTGAAGCATCCTGCAGTTATGTCACATGGAATTGGTGTCATGGGTGTTTCCAAAGGTGCAGAAATAACACTGATGATGGCTGCACACAGAAAGGATGTTAAAGCTATTGTGCCAATTTCTTCTTCTTCTATCATCTCAGCCGTGCCATTTAAACTGAGAGGACAGCTAACAGGCTCTTACTACGATACCTCTAAAGCAAAGATGACAACAGATGGGGCATTAATCCTTCATGACTGTTTACGTGTGCGTGAACTCTACCCTTCTGCTATAATACCAGTAGAGAAAATTGACTGTCCAATGTTGCTCGTTTGTGGAGAAGATGACGTAAATGTCCCAACTGTTGAAATGGCACAGGAAATTCTCAATCGAGTGAATTCTCACGGCAAGGGTTCTTTGTGTTCAGTTCTAAGTTATCCTGGAACGGGGCATCTAATTGAGCCCCCCTTTGCACCACACTGTTATGCTTCATATCAGAAGAGTGTTAAGGTGTCTTTTGCTTGGGGAGGCAATGCAAGGGACCATTCTCTAGCTCAAGAAGATTCATGGCAGAAAATTTTAGGATTCTTTAGTAAGAATATTGGTCAAAGCCACAACAGCCATCTTTAGACAATTTAATAAAAGAATTTGATAAAATCTAAAATTTAATGCTGACACGGATCAGCTATCTAAAATCTTTGCTTCGTAAACCGTTAACATTTTGACTCTCTTTGGAGAGGCATTGAATCTGCTTCACAGTGTGTAcagtcgaagctctcgtaagcggacaccctcgggatgcgaaaaaagtgtccgtaaccagatcgagctggctgcttacgagaatggttctggtaagcggccactagaggtgtaggagatagctggccgcttacaggagcttgctcagctTATGACCACCTCACAAACAGTCGTTCAATCTCATCAAACATGGCCCTCTTATGATCATATGCCAGTCTGTATTGTGCCGTGTTCTAGACAGCTAAGTAAATAAAAGAAAACAAGAAATAAATAATCTTCAGTTTAACATTTATTTATAAAATTATTTATAGCAGGTTCGGACAGCCGAGTTGTAGTGGCATTCAGTGACTGGTATTGAGGCCAAAAGTATTTAAAAAAATTGTCAATAAATCAGTTTTATTGATATTGTTTATTAAACAGAATACCGTAATTGATCAAATAGACGCCCAGGGCGCAATTTAAAATGTTAATTTTAGTTTTtaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08840 all species →	BAAT_C	BAAT / Acyl-CoA thioester hydrolase C terminal	Domain	Interproscan
PF04775 all species →	Bile_Hydr_Trans	Acyl-CoA thioester hydrolase/BAAT N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014940 all species →	Domain	BAAT/Acyl-CoA thioester hydrolase C-terminal	Interproscan
IPR016662 all species →	Family	Acyl-CoA thioesterase, long chain	Interproscan
IPR042490 all species →	Homologous_superfamily	Acyl-CoA thioester hydrolase/BAAT, N-terminal	Interproscan
IPR006862 all species →	Domain	Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10824 all species →	ACYL-COENZYME A THIOESTERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0016790 all species →	Molecular Function	thiolester hydrolase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG003785.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.