Detailed information of PcrG004082.mRNA1 in Podabacia crustacea

Genomic Location: ptg000098l:378912...382223
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008723 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17123
all species →		zf-RING_11RING-like zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR042494
all species →		FamilyE3 ubiquitin-protein ligase RNF103Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15302
all species →		E3 UBIQUITIN-PROTEIN LIGASE RNF103Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0030433
all species →		Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15695RNF103, KF1; E3 ubiquitin-protein ligase RNF103EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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