Gene detail

Detailed information of PcrG004261.mRNA1 in Podabacia crustacea

Genomic Location: ptg000102l:1580950...1597449
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG004261.mRNA1

ATGGATGATATTGCTGTCACTCTAAGGCTACCAAAGCAATCTGCTACTCAAAAACGTACATTAACCCAACGAAGTGACTTTAGCGGGTCTGAATCAAGCTCTCCATTAGATAAGCGACTCAAGAATTCGACACACGCTGAACACGAAGGCGGAGTCCAAGAAGTTTTCGAAGGAGCACCCGAATCACCGCTTGCCGTAGATATGTCGGAGAAGTGGACAGAGAAGCTCAACGAAATACTAGTTAAGCTGAATAAGCTAGACAGCATTGACACCACCCTGAATAATCTTTGTGCAAAGATGACTATAGTGGAAAGCGACGTATCGAAGCTGAAAGATGGCGCACGTGTTACTGAGAAGAATCTGAAGAAGATGGATGACGGTTTACAATGGATGAATACAGAATTGGAAGGCTTAAAATTGCAAATAAAGTTTCTTGAAACAGCTAAAGAAGATCTGCACACGCAGCAACTCTATGCAGAAGCCTATAGTCGCAGAGAAAATTTGAAATTCTTTGGCCTGGCTGAAAGGGAAACAAAGAGTAATCAAGAAGGCAGCGAAGCAATTAACACACGAGATCCCAAAGTGCTACCACACGGCAGTTACCAGAACTCTGCCACTTCTAAAACACTGTCAAACAGATGTAGTGATGAAGTAATGCATCCACAGCAAGGCTTTGATGGAACTAAAAGAACATCATTAGTAGATGAAGTTGTTTCAGATTGTAGTCCAAGAACAAACAAGGAAACGGATGACCCAATGTTACCCAAAGAACCTTCAGAGCAACTGCAAATGCAAACTGCAGAAATACACACAGAAGATGTACCAGCTGATAAAAAGACAGGTATTGAGAGTAATCAAAGTGCGGTTGACAATCCCCGTGGTTTGGAGGTGGGTTCCATGATCGAGGTCCCCATGGCAGATGGCTTTCCCAGATATGGTGTCATTCGCTGGATTGGAAAACTTTCCCAGGTGAAGGATAAGCTGGTTGCAGGTCTGGAATTGGAAGACGGACAGGCTGCACAGGCTGCATGCTCAGATGGGACATTTAATGGACAGAGATACTTCACATGTCCTGCAGGAAGAGGTTTCTTTACTTTACTGGACCACTGCCGGCAGGATTCACGTTTTACTCCCAATTCACCAAGCAATGACACAAGTTTTAATGCTGAGAAAGCCTTTGGAAGTTTGCCTTCTCCTGATGTCAAAGGTGTAACACTACCTCCTAAGACCCTTGAGGAAACACAGTGTGGCACAATGCGTGGCCTTCAAGGCCACCATAATTCATGTTACCTTGATGCGACACTTTACAGCATGTTTGCATTCTCCAGTGTTTTTGATACTCTGTTACATCGTCAGAAGAAAGATGGTGATCTGGCAGAGTATGATAAAGTGCAGACGGTGTTGAGAGAGTTGATTGTAAATCCTTTGAGAGTGCATGGTTTTGTACGGGCAGACCGTGTCCTTCAGCTGAGAGAGCTGTTAGACAAACTTAGTTCAACAGCAGGATTAGTGAATGAAGAAAAAGATCCAGAGGAATTTTTAAACTCTCTTCTGCAGCAAGTCTTGAAGGCCGATCCGTTCCTTCACTTAAAACCCCGTGATGTACAGGAAAAGGACAGTGAAGGAGCCTTCTTCTATCAAATCATAACAGAGAAAGACGAGAATGTGAAAATCGCCGAGGTTCAAAATCTGCTAGAACAGTCTTTTATCTCTGCAGATCTTATTTTATCTGAGCTTCCGTCATGCTTAATACTTCAGATGCCACGATTCGGCAGCAGATATAAGATGTACGACATGATTTTACCCAACATGGAACTGGATGTTTCTCACATCGTGGAAAATGTTCCTCGTGAATGCATCATGTGTGGCAAAGATGTAGCATTATTTGAGTGCAAGATGTGCTATCAAAAAGGATTAATGGGTGATGGGCCCGGAATAGCGAGTTACTGTAAAGGCTGTAATGACAAGGTACACTCGAATCCAAGACGTGCAGATCACAAACCTCGACCAGTGCTGCTACCCCGTGTGAACAGTCAGTACAGCAGCGAGAAGAGATGGCTTGAAAAACAGAAGATGGAGCTGTTTGCTGTTGTTTGTATCGAGACCAGTCATTATGTGGCATTTGTGAAGTGCGGTGTTGGAGCAGACGCGATGTGGTGCTTCTTTGACAGTATGGCGGACAGGAAAGGAGAGAGAAATGGTTACAACATTCCTGCAGTAACGCCTTGTCCAGAAGCTCTGGAGTGGCTCTCTAAAGATACCAAGGAAATTACGGCTGCAAAAGAGAAAGGCGAGATTCCTGAAAAAGTGCGCCGCCTTCTGGGAGATGGATATCTGTGCATGTATCAGAATCTGGACATGACCATGTACAAATAA

Transcript

PcrG004261.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001326 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11830 all species →	40S RIBOSOMAL PROTEIN S3A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08601	CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLD	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.