Gene detail

Detailed information of PcrG004580.mRNA1 in Podabacia crustacea

Genomic Location: ptg000104l:4049979...4052398
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG004580.mRNA1

TACAATTCCATCGATCCAGTTCTCCAATTTTCTACCAGATGATGCATTTCTAAACATCGGCATAAATTTTTGCAGCATTCGGAAGGCGAGTAAATATTAATCACGTGCACACCGATAAGTTCCCAATAGGATCAATTGATAGCGCTTGTAATTATTCCAAAGAATGTTAATAAATTAAAGCCGACCAATCATGGGCTCCCATGGGAGTCGCTCTTGAAAAAGAGAGGTCTTCAAAGTGACATGCTAGCGTTCCGACAGAACGTGCTTTTGAGTTTATTGTGTGATTGAGCTTTCAAACGAGCGCCAAATATCTTCCACTTCTTACTACAACCTACTCAAGAGAGGGAAGGCATATATCTGTCGACCTGCAGCTCATTTCGTGCCGAAGAACTGGTTGTTAACCAGTGATTTTCGTTGTTAATTTCAATCATGCCGAGAGGTGAGCATCACAGATCAGACCGTGATAGGGACCACAATCACAGAGACCGAAGAGATCGAGCAGAAGAAACTGGAAGTCAGGAAATATTAGATGAAGGAATTATACAAGTGCAGGTCATTCCACAAGACGACAATTGGGGCGAAACTGCCACTTCTATCACTGAAACAGCAACATCGATCGTAACACTTAGCGAGACAGACTTGAGCGATGTTGTGAAAGACCGCCGTCGGTTTTCATGCGGTGCCTTCGGGCGCCATGTTAAGCTGGTACCTCAAGCGTTTTTGTGTTTGCTTGCCGTCGTTTCGCCGATTCTTTTCGTCGTTTTCCCCATCGTAACGTGGAAACCTACTCCATGTGGTTCAGACTGTGACGGTTTATTTATCAGCTTTGCCGTCAAAGAGTTGTTGTTAGTGATCGGGATTTGGGCTTTATATTTTCGAATGTCGCGGGTTACTCTACCACGAGTATTTGTTCTCCGCGTTGGGTTTATGTTCCTCGTTTTCGTGGTTCTCGTGTGCTACTGGCTATTTTACGGCTTGAGAATCATCGAAAGAAAGACAGAACAGTTTTCTGACATCCTTCACTTTGCGGTCACTTTGATTGATACACTGCTGTTTCTGCATTACGCGTCTTTGGTGGTGCTTTGGATCAGACAAACTGACCCTTTGTTTACACTCAAAGTGATTCGAAGCACAGACGGAATCAGTCGATTTTACAACATCGGTCCTCTGTCAATCCAGCGGACGGCTGTGTTTGTGTTGGAGCAGTATTATAAGGATTTTCCCGAATTTAATCCGTATCTTTGGCAGGCACCCGCGAGGTCATCACAGAAGCAGTTCTCGAGTCTCAAATTTTATGACATTGATGGCAAGCAAAATGACAAAGTAAACCCACGGGCAAGAGCAATCTTGACGGCCGCTTCGACTCGGAGACGGGATCCAGCGAGAAATGACCGCTTTTACGAAGAAGCAGAGTTCGATCGAAAGGTGAAGCGCCGAAAGGCGCGTTTGTATAACGCCTGTGAAGAGGCCTTTGGACATATCAAACGAGTTCAGCTCGAACGAGGACCATGTGTTCCAATGGACCCCGAAGAAACTGCGCAATCATTGTTTCCCTCATTTGCAAGAGCCCTGCAAAAATACTTGAGGACTGTAAGACTGCACCATCGTTTTTCAATGGATGGAATTATTAAGCATCTAGCTCACTGCCTTACTTTCGATATGACCCCGAAAGCGTTTCTGGAACGTTATGTGAACGACCAACCCTGTGTGGAATTTACTACCAAAAAGCGAACTCAAAACTGGAGTTTAGTCTGCGAGGAACAGGTTACGAAATCGCTTTCCTCTTCGACAGTGTTTCAACTTAAAGGCGAGGATCTTTCTTTGGTGGTAACAGTGCGTAGACTTCCCTATTTTCATATTTCAGAAGACGAGTTTGATTTTGAAAGCAACAAGTTTGTGTTGAGGCTTAATTCCGAGACGTCGGTTTAGTATAAAGCGAGCTACAAACACTGTGGACTATATATTTTGTAAATATAATTATTATCGTTGTATTTCTCAAGTGTGCTCTCCAAGAGAGACAAACTTTAAGTTAAGGACAATTTTGAGACGCTTGGATATTACATTTGGATGTTTATTTCAGTTTGGAATGTACAATATAATATTGTTTTCTCGTACATGCTAGCGTTCTTTTCAGTAGTTTCGAATACAATCATCTTTGTATAGAATTTCTTTAGAAAGTGTTACAAGCGAAAGGGCATATTGTTCATTGAACACTCGCTACGAACATTTTGAATGGAATTGCTCAACATTTTCGAATGGATTGGTAGTTTAATTGCAATAGATTGGTTTTATCTTTATTTATATTCCTTGCCTTTAGTCGCGTCCGAAATTCCAGCTTAATTTACAAAGCAAAATAATTAAATCTTCTAGAGCTCATTTTAATAGTTAATTGAGGGTTGAAGTTGTACGCCATTAAATTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06638 all species →	Strabismus	Strabismus protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009539 all species →	Family	Vang-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20886 all species →	VANG-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001736 all species →	Biological Process	establishment of planar polarity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060071 all species →	Biological Process	Wnt signaling pathway, planar cell polarity pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04510	VANGL; vang-like	-	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.