Detailed information of PcrG004630.mRNA1 in Podabacia crustacea

Genomic Location: ptg000104l:5119527...5121049
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001687 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01142
all species →		TruDtRNA pseudouridine synthase D (TruD)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042214
all species →		Homologous_superfamilyPseudouridine synthase, TruD, catalytic domainInterproscan
IPR001656
all species →		FamilyPseudouridine synthase, TruDInterproscan
IPR011760
all species →		DomainPseudouridine synthase, TruD, insertion domainInterproscan
IPR020103
all species →		Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13326
all species →		TRNA PSEUDOURIDINE SYNTHASE DInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001522
all species →		Biological Processpseudouridine synthesisInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0009451
all species →		Biological ProcessRNA modificationInterproscan
GO:0009982
all species →		Molecular Functionpseudouridine synthase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for PcrG004630.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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