Gene detail

Detailed information of PcrG004680.mRNA1 in Podabacia crustacea

Genomic Location: ptg000105l:1545428...1548192
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01111 all species →	CKS	Cyclin-dependent kinase regulatory subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000789 all species →	Family	Cyclin-dependent kinase, regulatory subunit	Interproscan
IPR036858 all species →	Homologous_superfamily	Cyclin-dependent kinase, regulatory subunit superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23415 all species →	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0007346 all species →	Biological Process	regulation of mitotic cell cycle	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02219	CKS1; cyclin-dependent kinase regulatory subunit CKS1	-	Small cell lung cancer	ko05222	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.