Gene detail

Detailed information of PcrG005010.mRNA1 in Podabacia crustacea

Genomic Location: ptg000109l:3068015...3080668
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG005010.mRNA1

ATGGCGACTAGTAAACGATCGAAGAAGAATCAAACCCAGCGTTTCAAAAGTCGCAAGATTATCGAGTCCTTTTATGAAAAGCACTTTACGTTGCTTTCCTATCTTCGAAAGCTGAGCAAAGCCATCCGCCTCGTTCAAGATGGCGATCCCAAGGAATATCAAGCTCTTCTAAAGTCAACCTTGGTGGCAGTTCCCCGAGATCAGTCAGCTACACCGCCATTCAACCCGAAAAATACACAGTGGTTTACACTGAAGGAGATAATAAACCGAGTCATCGAACACCTCTGCCGAGCAAACAAAACAAACGTCCTTTCGCATGGTTTTGAGTGTTTGAGTGGTTATGGAAAGAAGGGAACAGTGGCTGGGACTGTTGGAATTCAGAACAGTTATCCTAACACCATTGTAAGCTATTTGAGAACGGCGAAAGCGTGGCAAGTCCTTCATCAACGAATTGGAGATGACCTGATGATCCACCTACTGCAGAACATGTCCTTGTTCGTCAAAGTAAATTCCAAGTGTTATTTTCAGCTAGCAGGATTTCCTTTAAGTCGTCTGAGTCCTTTGTCAGCAACAGATGTCTCTCCCACAGTAAGCAAAAGCAAGAAACGAATACCGCCAGTTGGTGACCGTGACGGAGATGGTGAAAATAGTATTTTGAAAAGAAAAACAAGAAGAGGAGGCAAACGGACAAGGAGGTACCGTGAGAATTCCAATCAGTCCAATCAGGAAGAGAAGGAAAATTTGCCTGGTGAAAGTGATGAGGTACACCGATATGGTGTGGCTGTTCATGGCAGTGATATAGTTACAAGCATATCAGCAAGTTCTCCTGTAGTATCAACGAAGTCTGTCCTAATAGATGGAGACAATCGTGACTTAGAGGAGACTAAAGAGGTCCCTCAGATCGGCAAACGTAAACGAAGGCTTGAGAGCAGTGATGGCATACAGGAGCAACAACCGAGCGCTAAGAAAGCTAGGGCAACTTCCAATGTCGATGGAGTTTTATCGTCGTCGTTTCTAGTGGAAACAACTAATAATGACCAGAGGAACACTCCAATGTGTAGTAAAGCTGATAAGCCTCCATCCCAAGTCTCCCCTTTATTATTTCCAGACGAAAGTAGTCAAAGTAGTGAAAAATCTTCTGAGGAAGAAACCTTCTTGTGCGAGCGGGCTAGTGAATCCTGCCCTTGTGATAATTTTTCTACTTCTTTATTTCAAGAAGACACAGAAGCAAATGATATCTGTGAATGCAGTGAGAAGGAAGAAATAAGGCCAGTGATTTCAGTGAAAGAGATTGTCCAAAGTGTGTTGAAAAGGAAGAAATCCGTTTCAGGACATAATCCGTGGGAGTATCTTGTGAAGTGTCTACCCAATTCAGAGCAGGTCAGAAGCAAGCCAAAGGCTCGAGGTGTCCGTAAAACTAAAGAAAACAACAAGCGACAGCCAGTTAAAAAAAGAAGTCGCCCGATGGCAAAGATAAAGTTAAAAATCTGTTTGAACGAAGTTACCCTGCCACGTTCAAGTTTGTTTTATTCGTCAAATCTTTCCCAAACGTTCCCCAAGAACCATATTATGGAAACATCGTCAGTGAGTATGGCTGGAGCACGCAGACTCGCCCAGCATATCTTCTTGCAAGAGAGCTGTTTGGCTGCCAGCAGAAACGGCGGTGGGGTAATGGGCAGTGAAAAGAAGGGTGATCAGACTGTCAAGAACGTGGCTACAGCCTCGACCAGCCAGGGTGTGTCAAAAACAGGGACACCTGCTCCGAAGAAGCAAAAGCCATTCCGTTTGCCAAAGAAGATCAAGAGGGTGCTACCGCTCCTTTTGAAATTTCTGGCAAGGCATAAGAAGTGTCCATTTAGAACTCTGTTGAGGCATCATTGCTATTACTCGGAGAACAGGGCGAAGAAGGGCAAGAAGATAAGAACTTTGCAGAGAATCCCATACCGAGTCAAGATGATGTACCACAAGAGATCTGGCAAAAGGGGCAAGAAGTCTTCCAAACGTGCACGATGTAAAACGAAATGCACTAAAGTTGACACACTGATGTATCAACACGCTGTGCGAAACTACACCAAACATGATCAGGTTTTGCGATTTCTGGAGTGTGTTTGCCACAAAGTTGTACCAAAGGAATTGTGGGGGTCATCGAAAAACAAAGCAAAGTTCCTTCAGAATCTTTCCAAGTTTGTCCGACTTCATCGAGCAGAGACGTTTACTCTCGCCCAACTGATGTCAGGGATCAAGGTGTCCAGTTGTGAATGGTTGAAGCAGAAAGGAAGCGAAAAGAAGTGTGTTCCCCTCTCTGACTCTCTTAAACAACAAGAGCTTCTGACTCAGTTCATCTGGTGGTTTGTTACTCAGTACCTCATGCTACTGCTGAAAACCTTCTTTTACATCACGGAGAGCGGTACTCATCGTCAGAAGGTGTTTTTCTACAGAAAGCCAGTCTGGGAAAAGATCCATCGGTTTGGTTTGAACGCGTTTTGTGGCGAGTTCTTTAAGCCGTTGAAGACCAAAGAAGCAGAGGAGCTCCTTCGCCGGCCATCGTCTTTAGGTTTTTCGCTTCTCAGGTTTATACCAAAGCGCTCAACTGTTCGACCAATCACCAACATGCGTCACTGTCCGACTAAAAAGGAACCAAACACAACTCAGAAACAGCAGTCAGTGAACATGAAATTACAGAACCTATTTGAAGTGCTGAAGTTCGAGAAGAAGCAGAACCCCAAGAGCCTTGGTGCCACCTTGTTTGGAGCTGACGATTTCTACCAAACACTAAAGCCGTTTGTCGCACGCGTACGCGCAGATTTGGAGAGAAGGCCGCTGTACTTCCTGCACGTGGACGTGAGTCATTGCTACGAGTCCATACTGCACCACAAGCTTTATGACGTCATAAAGGAAGTTCTTCAGGAAGAGGAATATCTAATTCGACGCTTTGCTTTGGTGCGGATGTCAGCAGGAAAGGTTTACAGAGAATTTCTGAAGCACGTCAGCACCGCAGATGACTGCCGTTCGTTTCCAGACTTCTTTCGTCATCTGGTTACGGCGTGGAAGCTAAAGAAAGTGATAGCTGTAGATAACGTGTGGTACGTGAGTGAGGACCGTGACAAACTCGTTAACATACTCGGAGAGCACATCTTTAACAACATCGTCAAGATTGGAAACAGCTATTACCAGCAAGAGAGGGGCATCGCACAGGGTTCTGTCTTGTCCACAATGCTTTGCGGCTTCTACTACAGCCAGATGGAAAGGACCCACTTATCAGATATATTCCAGGACCCAGACTCCCTCCTGTTGAGATGGGTGGACGACTTTCTTCTCATCACCCCACAGAAAAGCCTGGCTGATAAATTCCTGAATGTGATGCATGCCGGGATACCTGAGTACGGCTGTTTTATCAATCACGATAAAACACTGACAAACTATGATGCGGTCACGGCTGATGGAAGGGAGGTGAAGAAAGTCAGTGTGGGTGAGAGATTTCCCTGGTGTGGGTTTCTCCTGGATACAACTACACTAGAAGTTTCTCCAGACTTGTCTCGGTACACTAGTGAGTGTCTTCTCTTAAGGGACACTCTGACTGTGTCGTTAAATGCCCATCCTGGCGAGGCCCTTAGTAGGAAGCTTAGGTACTCCGTACGCCCAAAGTGCCATCCGTTGCTACTGGATCCAAATCTGAACACGCGCCAGAGCACCCTACTAAATGTGTACCAGGTGTTCCTGTTGACTGCCTACAAGTTTCACACCTACGCCAAAGAGTTGCCGCGAGGTGGTCAACCTAAGGATAACCCTGGATTCTTCTGCCGTCTAATCCTTGATTTGGCACAGTATTTTCACTCAGCAAGTTCTCGGAAGTGTCGCCAGCTGTCTCCTCGTGAAACCACGTTTTCGTTGGACGAGCATGAAGTCACGTGGCTTTGCCTTCGAGCATTTCAGGAGTGCCTGAGGAAAAAGCAATCCCGCTACAGAGAAGTTCTGAGATTTCTCAGGAAGGGTTTGTCTCAACTTCGCTTACCTGCAGAAGATTGTAAAATTATTACGGATAGCTCGCAACACGCTGTTTTTAAACACATCAAGTGA

Transcript

PcrG005010.mRNA1

CGGGAACCGGGAAATAACAAGCCATGTTGTGATCGATCGAATCTCCTTGTATAAGATTATGGCGACTAGTAAACGATCGAAGAAGAATCAAACCCAGCGTTTCAAAAGTCGCAAGATTATCGAGTCCTTTTATGAAAAGCACTTTACGTTGCTTTCCTATCTTCGAAAGCTGAGCAAAGCCATCCGCCTCGTTCAAGATGGCGATCCCAAGGAATATCAAGCTCTTCTAAAGTCAACCTTGGTGGCAGTTCCCCGAGATCAGTCAGCTACACCGCCATTCAACCCGAAAAATACACAGTGGTTTACACTGAAGGAGATAATAAACCGAGTCATCGAACACCTCTGCCGAGCAAACAAAACAAACGTCCTTTCGCATGGTTTTGAGTGTTTGAGTGGTTATGGAAAGAAGGGAACAGTGGCTGGGACTGTTGGAATTCAGAACAGTTATCCTAACACCATTGTAAGCTATTTGAGAACGGCGAAAGCGTGGCAAGTCCTTCATCAACGAATTGGAGATGACCTGATGATCCACCTACTGCAGAACATGTCCTTGTTCGTCAAAGTAAATTCCAAGTGTTATTTTCAGCTAGCAGGATTTCCTTTAAGTCGTCTGAGTCCTTTGTCAGCAACAGATGTCTCTCCCACAGTAAGCAAAAGCAAGAAACGAATACCGCCAGTTGGTGACCGTGACGGAGATGGTGAAAATAGTATTTTGAAAAGAAAAACAAGAAGAGGAGGCAAACGGACAAGGAGGTACCGTGAGAATTCCAATCAGTCCAATCAGGAAGAGAAGGAAAATTTGCCTGGTGAAAGTGATGAGGTACACCGATATGGTGTGGCTGTTCATGGCAGTGATATAGTTACAAGCATATCAGCAAGTTCTCCTGTAGTATCAACGAAGTCTGTCCTAATAGATGGAGACAATCGTGACTTAGAGGAGACTAAAGAGGTCCCTCAGATCGGCAAACGTAAACGAAGGCTTGAGAGCAGTGATGGCATACAGGAGCAACAACCGAGCGCTAAGAAAGCTAGGGCAACTTCCAATGTCGATGGAGTTTTATCGTCGTCGTTTCTAGTGGAAACAACTAATAATGACCAGAGGAACACTCCAATGTGTAGTAAAGCTGATAAGCCTCCATCCCAAGTCTCCCCTTTATTATTTCCAGACGAAAGTAGTCAAAGTAGTGAAAAATCTTCTGAGGAAGAAACCTTCTTGTGCGAGCGGGCTAGTGAATCCTGCCCTTGTGATAATTTTTCTACTTCTTTATTTCAAGAAGACACAGAAGCAAATGATATCTGTGAATGCAGTGAGAAGGAAGAAATAAGGCCAGTGATTTCAGTGAAAGAGATTGTCCAAAGTGTGTTGAAAAGGAAGAAATCCGTTTCAGGACATAATCCGTGGGAGTATCTTGTGAAGTGTCTACCCAATTCAGAGCAGGTCAGAAGCAAGCCAAAGGCTCGAGGTGTCCGTAAAACTAAAGAAAACAACAAGCGACAGCCAGTTAAAAAAAGAAGTCGCCCGATGGCAAAGATAAAGTTAAAAATCTGTTTGAACGAAGTTACCCTGCCACGTTCAAGTTTGTTTTATTCGTCAAATCTTTCCCAAACGTTCCCCAAGAACCATATTATGGAAACATCGTCAGTGAGTATGGCTGGAGCACGCAGACTCGCCCAGCATATCTTCTTGCAAGAGAGCTGTTTGGCTGCCAGCAGAAACGGCGGTGGGGTAATGGGCAGTGAAAAGAAGGGTGATCAGACTGTCAAGAACGTGGCTACAGCCTCGACCAGCCAGGGTGTGTCAAAAACAGGGACACCTGCTCCGAAGAAGCAAAAGCCATTCCGTTTGCCAAAGAAGATCAAGAGGGTGCTACCGCTCCTTTTGAAATTTCTGGCAAGGCATAAGAAGTGTCCATTTAGAACTCTGTTGAGGCATCATTGCTATTACTCGGAGAACAGGGCGAAGAAGGGCAAGAAGATAAGAACTTTGCAGAGAATCCCATACCGAGTCAAGATGATGTACCACAAGAGATCTGGCAAAAGGGGCAAGAAGTCTTCCAAACGTGCACGATGTAAAACGAAATGCACTAAAGTTGACACACTGATGTATCAACACGCTGTGCGAAACTACACCAAACATGATCAGGTTTTGCGATTTCTGGAGTGTGTTTGCCACAAAGTTGTACCAAAGGAATTGTGGGGGTCATCGAAAAACAAAGCAAAGTTCCTTCAGAATCTTTCCAAGTTTGTCCGACTTCATCGAGCAGAGACGTTTACTCTCGCCCAACTGATGTCAGGGATCAAGGTGTCCAGTTGTGAATGGTTGAAGCAGAAAGGAAGCGAAAAGAAGTGTGTTCCCCTCTCTGACTCTCTTAAACAACAAGAGCTTCTGACTCAGTTCATCTGGTGGTTTGTTACTCAGTACCTCATGCTACTGCTGAAAACCTTCTTTTACATCACGGAGAGCGGTACTCATCGTCAGAAGGTGTTTTTCTACAGAAAGCCAGTCTGGGAAAAGATCCATCGGTTTGGTTTGAACGCGTTTTGTGGCGAGTTCTTTAAGCCGTTGAAGACCAAAGAAGCAGAGGAGCTCCTTCGCCGGCCATCGTCTTTAGGTTTTTCGCTTCTCAGGTTTATACCAAAGCGCTCAACTGTTCGACCAATCACCAACATGCGTCACTGTCCGACTAAAAAGGAACCAAACACAACTCAGAAACAGCAGTCAGTGAACATGAAATTACAGAACCTATTTGAAGTGCTGAAGTTCGAGAAGAAGCAGAACCCCAAGAGCCTTGGTGCCACCTTGTTTGGAGCTGACGATTTCTACCAAACACTAAAGCCGTTTGTCGCACGCGTACGCGCAGATTTGGAGAGAAGGCCGCTGTACTTCCTGCACGTGGACGTGAGTCATTGCTACGAGTCCATACTGCACCACAAGCTTTATGACGTCATAAAGGAAGTTCTTCAGGAAGAGGAATATCTAATTCGACGCTTTGCTTTGGTGCGGATGTCAGCAGGAAAGGTTTACAGAGAATTTCTGAAGCACGTCAGCACCGCAGATGACTGCCGTTCGTTTCCAGACTTCTTTCGTCATCTGGTTACGGCGTGGAAGCTAAAGAAAGTGATAGCTGTAGATAACGTGTGGTACGTGAGTGAGGACCGTGACAAACTCGTTAACATACTCGGAGAGCACATCTTTAACAACATCGTCAAGATTGGAAACAGCTATTACCAGCAAGAGAGGGGCATCGCACAGGGTTCTGTCTTGTCCACAATGCTTTGCGGCTTCTACTACAGCCAGATGGAAAGGACCCACTTATCAGATATATTCCAGGACCCAGACTCCCTCCTGTTGAGATGGGTGGACGACTTTCTTCTCATCACCCCACAGAAAAGCCTGGCTGATAAATTCCTGAATGTGATGCATGCCGGGATACCTGAGTACGGCTGTTTTATCAATCACGATAAAACACTGACAAACTATGATGCGGTCACGGCTGATGGAAGGGAGGTGAAGAAAGTCAGTGTGGGTGAGAGATTTCCCTGGTGTGGGTTTCTCCTGGATACAACTACACTAGAAGTTTCTCCAGACTTGTCTCGGTACACTAGTGAGTGTCTTCTCTTAAGGGACACTCTGACTGTGTCGTTAAATGCCCATCCTGGCGAGGCCCTTAGTAGGAAGCTTAGGTACTCCGTACGCCCAAAGTGCCATCCGTTGCTACTGGATCCAAATCTGAACACGCGCCAGAGCACCCTACTAAATGTGTACCAGGTGTTCCTGTTGACTGCCTACAAGTTTCACACCTACGCCAAAGAGTTGCCGCGAGGTGGTCAACCTAAGGATAACCCTGGATTCTTCTGCCGTCTAATCCTTGATTTGGCACAGTATTTTCACTCAGCAAGTTCTCGGAAGTGTCGCCAGCTGTCTCCTCGTGAAACCACGTTTTCGTTGGACGAGCATGAAGTCACGTGGCTTTGCCTTCGAGCATTTCAGGAGTGCCTGAGGAAAAAGCAATCCCGCTACAGAGAAGTTCTGAGATTTCTCAGGAAGGGTTTGTCTCAACTTCGCTTACCTGCAGAAGATTGTAAAATTATTACGGATAGCTCGCAACACGCTGTTTTTAAACACATCAAGTGAAATTAAAGCAGACGTTAGTCTTGTGCTACTAATGTTGGGTCAAATTTATCTCACGGGACTATCGGAGAGTTCATCAAATACTGAATTGACCAAAAACGTGTTCGCAAAGTGCTAGTGCTGAGAAGACGGCGCCAGGGCTCTGAGTAGACCCGACACGTGACAAAATGGTGCTGGCCTACGGGACGATTTTATataataataataatataataataatttaatattcatattgcgcaaaatacatgtaaatatgatcaaatgctcattaTGTAGTATAATTAAAGTGATAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21399 all species →	TERT_C	Telomerase reverse transcriptase, C-terminal extension	Domain	Interproscan
PF12009 all species →	Telomerase_RBD	Telomerase ribonucleoprotein complex - RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049139 all species →	Domain	Telomerase reverse transcriptase, C-terminal extension	Interproscan
IPR021891 all species →	Domain	Telomerase ribonucleoprotein complex - RNA-binding domain	Interproscan
IPR003545 all species →	Family	Telomerase reverse transcriptase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12066 all species →	TELOMERASE REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003964 all species →	Molecular Function	RNA-directed DNA polymerase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003721 all species →	Molecular Function	obsolete telomerase RNA reverse transcriptase activity	Interproscan
GO:0000333 all species →	Cellular Component	telomerase catalytic core complex	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11126	TERT, EST2; telomerase reverse transcriptase	EC:2.7.7.49	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.