Gene detail

Detailed information of PcrG005161.mRNA1 in Podabacia crustacea

Genomic Location: ptg000112l:1460321...1475711
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG005161.mRNA1

GCTCGGCTGCTAAGCTCGGTTGCCATGGGCACTGACAAGTGGTAAGCAACATGGCGGGTTTTCATTGACTTTTAAGCGAAGGAAAAATGGCGAAGAAAACAGCGACAGATAAGGCCGATAAAGCTGATAAAACAGAAAAAGGTAGTGCTGCTGGTGATAAAGGAGCAGGGGATAAAACTCCTGTAGAGAGCACAAAGGAAATTGAAGAACAGCCTGTTGAACTAGAGCCTTACACTCCAACAGGAAATTTTGAAGTGGATTTTTGTGAGTTATGTACAAGAGCAGGTTTTCCGAGCATGCAAGTGGTTCCACGGCCCCATCGTCCACCAACACCAAATGTCATGCCCCAAGATAACACACCTGTAGGAAAGCAGGACAAGAAAGATGCCGACAAAAAAGATGATAGTGGTAAGGGTGACGATGCAGTGACAGTTCCTGGAAGTGAAACTGAAGAACCACCGACAACATATAACGTCAAAGAGAAATATCATTACTTTCAACCTAGAGTGGAGGTTGAAACTGAAGAGGAGGGGAATAAGTCTCATATCAAGGAGATCTACATCAGAGGATGGAAAATAGATGACAGAATTTTAAATATCTTGACTGTAACATTACCACCACTGGAGAAGTTAACTACAATTGATTTCTGGAACACTGGGCTTCAGGACAACAGTTTGAACACTCTAGCCACCAATGTTGTTACACATCTTCCTAATCTCAGAACTTTGTGTCTTGACAACAACCCTGTGACTCTTCAGAGATATGGAGTCTTCCTTGGTGAAGAAAGCACAATACAAAACTTGTCCTTGAGGAACTGCTACATTAATGACATGGGAGCAAAAATGATTGGTAAAGCACTGACGCCAAACAAGTCACTTACAACATTGAATCTGTGTTACAACAAGATTACATGTGAAGGAGCTGCCTGGATAGCAAAGGGTTTAAGAATGAATAGAACTCTGTTGTCGCTTAATCTCGGAAGCAATCTTATTGGTGACAACGGAGCTTCCAAGTTGGCTGAGGTGCTCTCAAGCTTTGCCCTTTCCCATGAAGAAGTGGTGGCCAGACGACTTCTCATTTCTAAAAAGTCCCCAGAAGATACGGGAAGTCCATCCAGAAATTTGAATGCACCAACTGGAGGGTCAAAGGACAGGCCAGCCAGTGTGCGCAGTGGAACACATGTTTCTAAGGAAGACAAGAAAAGCAGAGAGAAAAGAGATGCACAGAAAAAAAAGgaaactaaaaagcaggaaacagaaaaggcgaagaaaaTTGCCTCCACGGAAACTCTCAATAAGACCGCTGGCAAAGGAAAAAAAGTAAACACAACAAAGGGGGACAAAAAAGTACAACAACCAGAACAGGAGCAACCAGAAGTTGTGGAGTTTCCAAATCCACTCCTCGAAAACCCTATCAAGGAAGAAAATGGTGAAATTATAATTCCTGGAAACAGGGCGCTCATAAACCTTAACTTGTCTCGAAATAAAATAGGTGAAATAGGAGTGGAGGCTTTCCTTATTTCCATACAGAGACAAGCAGAAGTTTCTTCATTATCTGGTAAACCAACAGGAATCATGAGATTGTCAATCAGTAGAAACCAATTTCCATCAGAGAACGGTTCATATCAACGCTTGATGGAATTAATGCAAACACGTGATCCATTTTACAAACCTCCGCAACCAAGTCCCGTTGATGAGACTGGTGCGTCCACAAAGGTATGTTCAAGGTTATTTTAACGAAAGGCGATATTGTCGCGCAAACGTTGCAAATGCAAATACACTGAAAGCTAGTTGTTTTATCTTCTTTGTCAATTCATCCGTCTGAATGGCTTTTATGTTCACCAATGAAGTCTCTGCAAAATCAGAAGACCATACGTATCATATTTTCCACACGAGAGGGCAGTACAGGGAGAAATCGACCTAAGGAGGCTAAGGTATTGACAGTGCAGGAATCGAGCTGAGCGAAGTTTATACAAGAACAACTGAGCTGTGATATTTTCACAGCTTCAGTAACACGAAATTTGAAGAACAGAAAATGACTTCTGTACATCAATAACATGTAACTCGATCAATAgccaacgttcgatatatcaaaattcaaacacggaagcgaggctttctgatccaaatttgttttctttgtatcaagtAGAGATCATTTTTACTGCAAATGTAATGATAAACTATTTGTTGATCATTTTGGCAATTAACAGTTTTCCTTTCTTGTGTTTATTTTCATTAGGACGAAGCTTGATGGGGCATAAGCTGTCAGAACGTTCATAATGCTCGACAGAAATGCAGCAAAATTATCAATAGGCTTTTTGTTAGATAATGTTTGGTTTAGCGGAATGCTACACTTATTTCATCATGCCAAAGAAATTAAAATTGAAGTCGATGGTAATCCCATTTGAATGTTTTAAACGACGGTCTCTTGATGTGCCAAGAACATATTTTGTCATTGCTATTTAATGACACTGTAAGATATTGTAAATAAAACACTTGTTAAATTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR053040 all species →	Family	Leucine-rich repeat-containing protein 71	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46984 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG005161.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.