Gene detail

Detailed information of PcrG005393.mRNA1 in Podabacia crustacea

Genomic Location: ptg000126l:16615...23055
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16205 all species →	Ribosomal_S17_N	Ribosomal_S17 N-terminal	Family	Interproscan
PF00366 all species →	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019979 all species →	Conserved_site	Small ribosomal subunit protein uS17, conserved site	Interproscan
IPR000266 all species →	Family	Small ribosomal subunit protein uS17	Interproscan
IPR032440 all species →	Domain	Small ribosomal subunit protein uS17, N-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR028333 all species →	Family	Small ribosomal subunit protein uS17, archaeal/eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10744 all species →	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02949	RP-S11e, RPS11; small subunit ribosomal protein S11e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.