Gene detail

Detailed information of PcrG005505.mRNA1 in Podabacia crustacea

Genomic Location: ptg000128l:1891564...1933964
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG005505.mRNA1

ATGAAGAAAAGGAAAGGGGGAGAAGTAAACGAGGAAGGAATATCGGAAAGAAAGAAGAAGGCTCCTGGTTTTGTGGACAAGAACCAAAACAACAACAATACGACTGAGCTTGTGCGCACGGTGAAAAGTTTATTACAGAAAGAACAGACAAGACTTTCTGGTTTAAAGAAACTTCTAGGTGCACTAAATGAAGCACAAGACAAGGAAACAGTTGCAACCATTGTCAAGGAAGGAGGAGAGTTTCAGGAAGTTTTTAAAATTTTAGAGGGAGGCAGACATAATCTTTCTCAGCTTGAGATCCAGACATGCCTGGAGATCCTGGAAAATGTTTTGTCATTCACTGCAGAGGAAAGCCAACTTTCCACAAGAACAGGAATGTCTATAGTGCAGCGAGTCTTGCAAAGTCACTTGAAGATACTATACTCATGTTTGAATCCAACAAATCCCCCTGAAGTTATAAAATCTGCTTTGAGACTGCTCACAGCCATGGTCACACAAGGTGCTTCAGCTGTAAGAGAAGTTCAAAGGTCATTTGATTTCACCTTAAAGTCACTTTCCTCACTACCAAACAAACGTGACAGCAAGTCAGTGCAAGATGTCAGGACTTGTTTCACATACTTCTGTCTCTCATTTCTGATGTTTGGTGATTTGACTGTTATGAAGCAAATCTTAGAACTGAAAGGATTCCTCCAGTCAGTAATGAAAGGTTTGCAGTTTGACACACCAGATGTTGTTCATGCTGTATTGTCAACCCTTCAGGGAAGGGTTGTGCAAAATTCTGGAATAACAAAGAAAACAAAAGTGCAGTTCTTCAACTCCTATGTCCTTTCTCAACTGGCAACTCTTTATCAATACACCAAGGATAGTGATGAAGAGAACAGCAATGATGAACATAAATCAGATCAAACAGTGCGGCAAAAAGTGCATGATCTGTTGTTGAAAATCTGTGGTTCATTTAAGCTTGGAATTTGTTTTTCAAATGCTGCTGGAGCATTTTCTACCAGGAGTAATAACCCAGTGTTGTTAAAGTTCCTTCAAAGTTTATCTTCAGTGGCAACAGATGTATTAATACAAGAACTGGTGATCACTGCCTTATCCTGTTGTCAAGATGTCCTGAAGCCTTTTCTCGCAAGTTTGACAGCAACATACGAGCCCAGACTTTCTATGCCTTGGATAGCAAACATGAATTTGGTGACAAAGATTTACATGGCACTACCGCAGCCTTCACAAATTCCGGAGAAATCTGGTTTGAAGATTACAGCAGAAATACTACCATCCTTGATCAACATGGTTGTTCCAGTGGGAATAAGTAGGACAGCTTTCAGTCGTGGAGTTCAGCATGCAAGTTCCCTGGTAAAGCATACAACATTATCACTGGTAGAAGTAATCCTCAACAGAGCACAGAATGCTACAAGTTGCCTGGCCTTCCAAGGTGGTGGAGCACTCTATCATAAGAACATTGCAACAAAGCCAGAAGCTCCATTACTGCATCAGTTTAGAGAAGAGGTTATCAAGGCACTACCTGATGTGACAACCATCGTCTCACTGAGACAAAACCTTGTTAGTAGTAAAGCAAAGGAAAAGTCACAAGGTGAAGAAGGGCCTAGTCCCACAGTTCTTCTTGCACAAAGTCTGAAAGTAATCCATGGATTTCAGATGCTATGGCCATTAGCCCTGTCTCATGTTAACTTTGACCTCAGAAAATTGTTGCCAGGACAACAGGAGATGACACTGCCACCTATTGTGCAACATTTGACTTTACAGATTCTGCTTTGCGCTCCATCCAGGAGTTTAAATTGGTATCAGCAGAAAGGAAAAACATCAGCATCTTTTTTGTACTCAATACTCAACTTGTATGCATCAGTTGGCTGTAAAAATATCAAGAATGATGCTAAGCAACTTCTGTGGAAGCTTCTTGGTGAAGCAGGATTAGTCAGCAGCAATGAGCAAACAAATGAAGTGGAAACTTGGCTGAGTCATCTGTGCCTAAGTAAAATGAATGAAGGAAACAAAGAGACACTTCTGAGGTTTTTAGATGAAGTATTCACTGCAGTAGCTTCTGAGCCATACGTGTACACAGACATAGTAATTGACATGCAGACTGAAGCAGTTGCACAAGAGGCAAGTGTGATGCAGTTTGGTATGGATTCTACAGAACAGAACTGGTCCTCAGATGCAAGTCTTTCAATGAGTCTGCTGCTTGTTGGAGCTTTAAAGCATTACTCTCAGATTGTCTCCAAGGCTACTGAATCAGACAAGACGGCATCAGTGGAGAGTATAGATTGCATATCCCGTTACATGAACTGCATAATCTTTGATATGATTCACACTGCACCAAAGCCAACCATTCTGTGTTTAGCTGTCTTTCATTATTATGGTAACATCGTTGTGCCAGAACATTTGACGGCCATAAGAAGTTTACACAAAGCACTGCTTCAGTATGTAAGCTACTGGCTGCCTGGTCCAATACAAGAACAAGGCATACTCAGTTATTTGAAGGAACAACCAAAGGGCAGTGACAAAAACTTGAAGGATGTGCACAGCTTTTTGGACAGGACTACTGTAGACACTGAGCAAGAGAAAGAGGCAGCATTGACAAACCTGTATCGTCATCTTGAGCCCCTGAGTGAGATGCAGTTCCAGTCAGTTATTGCGGACTGTGTTGACTTTTGCATACATCACCTTTCTTCAGATTTTTCGCCTCTTGTTCAAGCTTTGCAAGTCAAGAATTATATAGTCACAGGCTCTACCAGTGATGGAAACATTGCCCCTTTGTTACAAGCCCTTCCATTTAGTACCCTTGTGTGGCAGGTGCTTGGAAAAGCTATTCAAGCTACAAATACAACTTCAAGTGAGGGACAGGCAACAGTGCAACCAGAAACATCTTCATCTGTGAACAACACTTCAAGCCCTGTTCACAATTCTTGGATGCAGAGTCTGTTGATGACTGCATTAGAAAAAGAACCTTTGTCAAGGACTGTTCCACTTTGCTACCATCTCCTCCTTTATCTGCGTTTGCTCAAAAGGAAACTCGTCACCATTTGTAATGCAGCTGAACAAGGAAGAGTGCAATCTGCAATAGGACTATGCTTTCAGTTGCTCCAGTGTCTGTTGCATCGGTCAGTGTTGGTCCAGCAGAAAGTAGACAAACGCGAGACAAATGAAGTCAAAGAGACATATAATGATGAACATGGTATGTTTTGCTACAAGCCTGACAAACAGGGATTGGATCACGTAAAAGACACGTGCTGCACTATTCTTCATCATCCGGTGATTCTTAATAGTTTTCTATGGAAACCAGAGCAGGCTCTGTCTCAGCACATGTTCCAGGATAGCAGCATCAAGCTGACATATAATGTGGCTAACCTGCTGCTTGCTGTACTGCCAAATCTAACATGGCAACAGAAGAAGATTCTGATGGGACCTTTTGTTGACAAGCTGTGCAATGATGGAATGATGGAAATTGAATCTGCACAACATGGAAATGCGGTGCCATCATCCCAAGTTTTCTATGTACTTGGCCTCTTCCATGAACACTGTGACAGAGAATATCAAGCCAAATTCATATCACGTTTGGCTCAACTCCCTTCAAACATGCTGGTGACAACTGATCCTTCATCAAATGAGACAACGCCATCAGTGTTTCTTGTCACTCTGTTGATGCTGCTAGAAGGAGAATCTCTTGGTGACGAAACACTTTCACATTCACAATCTGCACTGTTTACAGACGTTGCATCAAAGACTCGGGAGCCACTTTCTGTGTCGTATTTCAAGCAACTGATCAAGATCTTTGAGAGTGTGAACTGTCCACAGTTGGACTTCACAATTTTAAAACTTTTGCAAAAGTCTTTGTTGTATGTGCTTTCCTCGACAACTTCTCTTCTAAATGCAAGTCTCAGTAATCCAACAGAAGTCAAAGTCACTGTTGCAGCGTATTTAGTGGTGCATTCCCCAGCACTGAGGTCACATTTTGAAATGTGCTGTCTGAGTGCACCAAATACAAAGAAGAAGGTGAAAACTCAAGGCGAGAACTTGTCAGCTGTTACAATAAAATTCGAGAATCATCTAGTAGAATACCTTCCTTTGGTGTCATCTTACTTAGTTTACATCCAAGAAACAAGGGGAGAATCTTTAGGTAAGACCAAAACTCAAGCTGTGGTGTTACATTTGAATCAAGCATACTGGGAGCCATTGTGGAAGTGGCTTATTGGCGATAGAGATGGAATTTTCAAAAACTCTGAGGAATTATGTATGAAGGTGCTTGCTGCTCTTATTGACACCATGCAGAGAGATGACAGTCTTTGCAAAAGGCTCGAAGAACTTTTGATGAAAGCCTCCCTGTGGGACAGCTTCCAGCTGAGAATCTGTCACCAACTGGCAACACGCCAGTGTCATTACTACTCTACCAATGAACAGAGAGAAGATATCATGAGCAAATGCTGCTTTGCCTGTATGGATTTCTTGTCAAGTGTTCTAGTAGAAGGCAACAACGACGATGATGAACCAGTGATTAACGATATTTTGAATCACTTGGAATCGATTTGCGAGAATGCTGTTACTACCAGTGTCATCGATGAAGTTTGCATTACAACGTGGAAAAGCTTTGTAACTAACTGTTTGAGGTACAAGTTTGAAAATGCCAAGGTTCTGGCAACTTTGAGATTCATTATAAAGATACTTTACAAGGGGCATGGAGAAAACAAGAATCTTGCTGGTGAATTGCTGTCTCTGGACACTTTGTATGAAATGGTGTTAAGCCATTCTCAGTTCTTGGATATCTTTCTCGGTAATGATGAAAAGAGCGGGACAAAAGAAAGCCTAGTTGAGCTGATGATTACAGTCGTGGAGCTGAACCCTAGCTGCTGCAAGACCTCACACCTGCCTGTACTGTTTGCTGCTTACTCTGCGTCACTGTCTACCACAGACCAGTCCATTCTGGTCCTGTTGAATCTGTATGAGAAAAACCACACGTCATTTAAGAACTACAGACCTTTTCTGTGGGGCCAAGCCGCCGCACACCATCATCAAACCACCAAGAGCCTGGGTCCATCACTATGGCAACAGCCAAGTGTCACGGAAGTGCTGGAACAAATAGATGCCAGCAAAATGTACCATTCAGCGGTAGCATTTCCACAGAGCAGGCTGCTGCAGCCTCAAGTCCAGAGTGAGCTTTCTTATAAGACGCTCCAAGACGTTTACGACCCTTGCTTCCTTCTGCCGTTATTCAGCTGCATTCTAGCTCCAAATTTTCAAATTGACTGGCGAAAGTTCATAGAACAAGGTTGCTTGGGTTTCGCAGTAGCCTCGTTGGCCTCACGTGATGTTCACATGCGGCAGGCTGGATATCATGTGCTCAGCAGATACATGATGCATCTTGAGGGAGCCAGATTCAAAGAGAGAAAACAGATTTTCCATCTGCTAACGTGTTTAAAGAACGGTGTTACAGAAGCAAACTGCCGCATATCCAGTTTAATGGTGTGCTTTGTAGCTCGTGTGGCTAACATCCTACTGAAACCAGAGCATCCTTTCTACATAATGATGAACAGCTTTCTACTCCAAAGACCAGCTTTGGATCTCAGAGATTTACCATTGTTTTTTACCATGTTCAACAGCAGCAGCATGCAGCATGTGACCGAGCGGTCCTGGATGCTTCAGTTGCTGGTGGATGGAATGAAGGCCAGCCCTGATTACTATCTCTACAAACGACGTCACGTGATTGAACTAGCGTTGAGTTATCACGACTCACCGGTCAGCGATCATCACTCGCAGAATGTGGTGACTCAACTGCTGTTGTCAGCTCTGAAGATTCATCCGGCAGCTTATGATCTTACCAAGAACTACGGCATTGTTGCCtggattcactctttgtgtttcaagagCCCTGAAAAACTTAGCACATGTCTGAACTTGCTCCAAACTCTTTGGTTTACACTACATGCTACTGACAAGAGCAGCAAAGACTTGGACGGCGAAGAGAAATCCGTTCGTCTGCCTCCAAACTTGGCTCAAGAATGCGCATTAGTTTGCTGGACTCTTCTTGAGCAACTCAGATTATGCCCAGGTGTAACTAATACCTGTAGCTATTTGAAACTACTGGCATCCGTCATCACTTACCTAGCAGCCCATGAACAGCCTTCTGGATTGTCATGTGACCGTGTTGTGAGCCTGCTAGGCTTGTGGTGTGCGGCATTTGACGAGACTGTGATACTGAATCAACTTCTGTCCTCACTGAACATGGATGAAATACTGAGCACCAACGTCCAAACTGACATACCATCCGAACCCGAGTATATCAAACTCAAGATAGAAAGCTTATCTTCGTTGTTAGCAGTACTTACGTCATGGCAGCCGTCGGTCGCAGCAACAAACCAGACTTCATTTTATCTTGTCGTCTGGCGCTTCGGACTGATGTGCTGCCGTGATTCACCTTTGATAAACAAGCTTAAAATTGATTGTCAACCGAACAGTGAAGGCCTAATACCAGTTCGTCTCCTAGCATTTCTGCGTTGGTTCAGAAAGTGTCTTGTGGAGGACCGTGCACTGCAGGATCGTCTTGTAACAGAGAGCTCTTCATTTGAAGTCAACCTTCTGTTGCAGCTTCACCAGTTAAGTCTGTCCAACAAGGCGACTGGCTTGTCACAACACAGCGAATATGACAAATGCATTGCGAACTGTAGCTTTGTAGTTACAAGGGAGCTTAACATGATTTGTCTGGTTTTGCTTGCTGCAGCGCAGCGAGTTAACCGGGAAGACGATACCAAGGGGTCACTGCAACCAGCGGTTTGTCAGCTTATCTTTCAGGAGCCGTATGTTGATGTCATCACTAAAGGACTGGAGAAAGTGGTTCTTCCTTTGCTACCCGACCCTTGTAGAGACTTTAAGGAGGAGAGTTGTCTTCAAGATCAAGATGTCGTTTTACAGGAGCTGGTGTCTCTTTTAATGCAAGAGCTGTGGTTGGAAAGACCCATTCCTCACCAATTCCTGTCATACTTGCTCAGTCAGCGTGACAGTGGGCACCCTGTGGTAGATCCACTGATAAAGTCTTTTGGTGGTACAAAGGTCATTATAAAGTGGATACAAAAAGATGGTGTCTGA

Transcript

PcrG005505.mRNA1

Protein

PcrG005505.mRNA1

MKKRKGGEVNEEGISERKKKAPGFVDKNQNNNNTTELVRTVKSLLQKEQTRLSGLKKLLGALNEAQDKETVATIVKEGGEFQEVFKILEGGRHNLSQLEIQTCLEILENVLSFTAEESQLSTRTGMSIVQRVLQSHLKILYSCLNPTNPPEVIKSALRLLTAMVTQGASAVREVQRSFDFTLKSLSSLPNKRDSKSVQDVRTCFTYFCLSFLMFGDLTVMKQILELKGFLQSVMKGLQFDTPDVVHAVLSTLQGRVVQNSGITKKTKVQFFNSYVLSQLATLYQYTKDSDEENSNDEHKSDQTVRQKVHDLLLKICGSFKLGICFSNAAGAFSTRSNNPVLLKFLQSLSSVATDVLIQELVITALSCCQDVLKPFLASLTATYEPRLSMPWIANMNLVTKIYMALPQPSQIPEKSGLKITAEILPSLINMVVPVGISRTAFSRGVQHASSLVKHTTLSLVEVILNRAQNATSCLAFQGGGALYHKNIATKPEAPLLHQFREEVIKALPDVTTIVSLRQNLVSSKAKEKSQGEEGPSPTVLLAQSLKVIHGFQMLWPLALSHVNFDLRKLLPGQQEMTLPPIVQHLTLQILLCAPSRSLNWYQQKGKTSASFLYSILNLYASVGCKNIKNDAKQLLWKLLGEAGLVSSNEQTNEVETWLSHLCLSKMNEGNKETLLRFLDEVFTAVASEPYVYTDIVIDMQTEAVAQEASVMQFGMDSTEQNWSSDASLSMSLLLVGALKHYSQIVSKATESDKTASVESIDCISRYMNCIIFDMIHTAPKPTILCLAVFHYYGNIVVPEHLTAIRSLHKALLQYVSYWLPGPIQEQGILSYLKEQPKGSDKNLKDVHSFLDRTTVDTEQEKEAALTNLYRHLEPLSEMQFQSVIADCVDFCIHHLSSDFSPLVQALQVKNYIVTGSTSDGNIAPLLQALPFSTLVWQVLGKAIQATNTTSSEGQATVQPETSSSVNNTSSPVHNSWMQSLLMTALEKEPLSRTVPLCYHLLLYLRLLKRKLVTICNAAEQGRVQSAIGLCFQLLQCLLHRSVLVQQKVDKRETNEVKETYNDEHGMFCYKPDKQGLDHVKDTCCTILHHPVILNSFLWKPEQALSQHMFQDSSIKLTYNVANLLLAVLPNLTWQQKKILMGPFVDKLCNDGMMEIESAQHGNAVPSSQVFYVLGLFHEHCDREYQAKFISRLAQLPSNMLVTTDPSSNETTPSVFLVTLLMLLEGESLGDETLSHSQSALFTDVASKTREPLSVSYFKQLIKIFESVNCPQLDFTILKLLQKSLLYVLSSTTSLLNASLSNPTEVKVTVAAYLVVHSPALRSHFEMCCLSAPNTKKKVKTQGENLSAVTIKFENHLVEYLPLVSSYLVYIQETRGESLGKTKTQAVVLHLNQAYWEPLWKWLIGDRDGIFKNSEELCMKVLAALIDTMQRDDSLCKRLEELLMKASLWDSFQLRICHQLATRQCHYYSTNEQREDIMSKCCFACMDFLSSVLVEGNNDDDEPVINDILNHLESICENAVTTSVIDEVCITTWKSFVTNCLRYKFENAKVLATLRFIIKILYKGHGENKNLAGELLSLDTLYEMVLSHSQFLDIFLGNDEKSGTKESLVELMITVVELNPSCCKTSHLPVLFAAYSASLSTTDQSILVLLNLYEKNHTSFKNYRPFLWGQAAAHHHQTTKSLGPSLWQQPSVTEVLEQIDASKMYHSAVAFPQSRLLQPQVQSELSYKTLQDVYDPCFLLPLFSCILAPNFQIDWRKFIEQGCLGFAVASLASRDVHMRQAGYHVLSRYMMHLEGARFKERKQIFHLLTCLKNGVTEANCRISSLMVCFVARVANILLKPEHPFYIMMNSFLLQRPALDLRDLPLFFTMFNSSSMQHVTERSWMLQLLVDGMKASPDYYLYKRRHVIELALSYHDSPVSDHHSQNVVTQLLLSALKIHPAAYDLTKNYGIVAWIHSLCFKSPEKLSTCLNLLQTLWFTLHATDKSSKDLDGEEKSVRLPPNLAQECALVCWTLLEQLRLCPGVTNTCSYLKLLASVITYLAAHEQPSGLSCDRVVSLLGLWCAAFDETVILNQLLSSLNMDEILSTNVQTDIPSEPEYIKLKIESLSSLLAVLTSWQPSVAATNQTSFYLVVWRFGLMCCRDSPLINKLKIDCQPNSEGLIPVRLLAFLRWFRKCLVEDRALQDRLVTESSSFEVNLLLQLHQLSLSNKATGLSQHSEYDKCIANCSFVVTRELNMICLVLLAAAQRVNREDDTKGSLQPAVCQLIFQEPYVDVITKGLEKVVLPLLPDPCRDFKEESCLQDQDVVLQELVSLLMQELWLERPIPHQFLSYLLSQRDSGHPVVDPLIKSFGGTKVIIKWIQKDGV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16201 all species →	NopRA1	Nucleolar pre-ribosomal-associated protein 1	Family	Interproscan
PF11707 all species →	Npa1	Ribosome 60S biogenesis N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039844 all species →	Family	Nucleolar pre-ribosomal-associated protein 1	Interproscan
IPR032436 all species →	Domain	Nucleolar pre-ribosomal-associated protein 1, C-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021714 all species →	Domain	Nucleolar pre-ribosomal-associated protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13500 all species →	NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000466 all species →	Biological Process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14861	URB1; nucleolar pre-ribosomal-associated protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.