Gene detail

Detailed information of PcrG005507.mRNA1 in Podabacia crustacea

Genomic Location: ptg000128l:1956091...1958720
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG005507.mRNA1

CAATTTGCTTGTGGTGAGTAAGGACATGTTCGATGTATTTTAGTGTAAAAAAATGTTTCATTCGCTTTACATGAGAGAACAAGCGACACTTTCGAGCTATCTTTTTTCTCAAACTGAACGAGCGAAGCGAGTTGGATCCATTAAGCTAAGTCAAAATTGCGAAATGGAACAAGTGCACAAGTCTGGTATTAACTGTCTTGACATCGACACAGGCGAGGGGAAATATCTATTGTCTTCTAGTTCGAATGGAAGTATAGCTGTCCATGATATAGAGGAATGCTTTTATCATGACTCCTTCAAATGCATGTCAGTCGCTTTAATAGAAAGAACGCTAAAAGACAGTCATAAACACAGTGTTGAAACTGTCCAGTGGTACCCAAATGACACAGGAATGTTTTTATCAAGTTCGGTTGATTCCACACTCAAAGTGTGGGATTCAAATGCACTTGAAGTTGTTGAGAGCTTTCGGCTTGAAGGGATGGTGTACCACCATCAAATGCCAAGGAACTCCAGGAAACATTGCCTGGTTGCAACCGCTTGCGAGGACTCAAGAGTGTATCTTTGTGATTTGAAATCAGGTTCTGCGACTCATATTTTAAAGGGGCACTCCAAGGCAGTTGTCTCTGTGTCATGGTCACCAAGGAATGAATACCTCTTAGCTACTGGTAGCCGTGACAACAAAGTGCTTCTGTGGGATGTGCGAAAGGCTGTTGGAAGTCTCCTCTCATTGGATCAGCACAATGGCAAAGGCGGGTCTAGGTCGTCAACCATTAGCACAGCCCATAATGGTCATGTGAATAATATTTCCTTCTCACATGATGGATTGCACATATTGACTTATGGAACAGATGATCGTTTAAGGTTGTGGGATGCGTTTACTGGGAAGAACACCTTGGTTAATTTCGGTTGTGTCCACAATCCCAGTAAGAAGGCAGTTAAGCTTTGCCTATCAACTGGAACTGCTAAAGAAGTGGCATTTGTTCCTTCTGGTAGCAATATTGAAGTGTATGAAGTTGTTACAGGAAGGCACATGGCTACTCTTGGTGGTCATTACAACAATGTAAACTGCTGTATATTTCATCCGCATTTTCAAGCTGTCTTTAGTGGAGCAAATGATACAAACATCTTAGTATGGCTTCCCAAGATGAACAGAACTGAAGATATAAAGGAAGCTCAGTCAGTAGATGCTGTCAGTGCAGCAAAAAAAGTGGATAAACCTTATCAAGACTCCTGGAGCAGTGATGAAGAGGAAACATAAGAAATAGAGGCACTCTATTTATACTCTTAGTTCCTGCTAGTGAAGCTTTGACAGAGTGGATATCCCATTTCTTCCATGTGTCAACAGCTTGTCTCTAtaaaggtcggcacacactagaggactacagctgtagtcgcagggacttgctttgggaccagttccctaatgtgtacttatattttgcatcaaaattctagtcgcagggaccacatatttggtccctgcgactagtcccacaaattaagttggtttgatttctcgggcaagtcgcagggaccaatagtcccacaaatcaaatttctagtgcgtacacactaagggataagtccctgcgactGTTACCTGTGGAAACTCTGTTTAAAGGCACCTCATTTAAGAGGATGCAAACATTTCATGTGGCAAAATGCTCTTATCGCTATATCGATTACTTCTTCGGATGAATTTACTTTTTAACCTGGTCTCCAttaccaccgtttccattgatacactacgtcagaaatcaaaacaaaagcagaaatgtttccaagatttccatcaatcatacatgctatccccagattggatggaattccaccaatcacagcctgctagcatgatgtaaagaaggtcagaaggtcacactagttgctgttattggtgaattttgatccgATCTGTCGATAACGTGCAAgactgacggaaatcttggaaacgtttctgtgagtgtttatttctgaagtcgtgtatcaatgcaaatggtggtaaGGGGACAACTTTTTTTGCTACTGCATCCCTGGTATGTGGAAATTCTTCTTACAAGTAATGAGCAATAAGGTGAACAAACATTATGTGTGATTTACAACACAGCAAATGACTATATAATCTAGACGATGGTGATGTAAGGAGAACTCAGTCAATAAACAATCATAATTTTGAGGTGTCGGTACCACAATACAAGATAGTGTAAAAGCTCCATTAAGCCCCATCCCCCCCCCCCCCCTACATCCAAAAAGCCTCTTTTGGAAGTTGATTTTCAACATTCAGCTGCGCTAGTATCTGGAGTATCTGTTGATCCTGCTGGTTCGTTTAAAGATTACTTAAATTTCGAATGATATACAATCACCatcaatacgctgcgaaaaatggatgcaatcaatgaaaatcaatagtaaacgatggcaatcgatgcaattaaggaaatttcatttgtgactttggattgttcattgattggccaaaaccaatcgatatcaattaactaataattatcgatttatatggattgattgattggtttccgatcatcaatttccattgattgaacacacgggGATATAtatacacctaattgcaaatatatattattataacgttgtcatagagaaaagaaaaa

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR042238 all species →	Family	DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46202 all species →	DNA EXCISION REPAIR PROTEIN ERCC-8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000109 all species →	Cellular Component	nucleotide-excision repair complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0031464 all species →	Cellular Component	Cul4A-RING E3 ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10570	ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.