Gene detail

Detailed information of PcrG006345.mRNA1 in Podabacia crustacea

Genomic Location: ptg000176l:1623508...1632783
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG006345.mRNA1

CCGGGATGTGGAAATGAGAAGGAAGTCTTTTGTAAAGTTCTAGCAGCGCTGATTTTAAAAGAACAGCGGAACTGAAAAAGTAATAGCGATGTGGATAAAAGCATTAGTCAATACAGTGCTGATTATGAGCATAACTGCAGCACCAACTGACCATTTCAATGTGTTCTTGGACGCGAATCAAGTTGTAGGTCCTCTGCGACACTTCTGGGAAAGCACAGGATTTTGTCCTCCAGAACCTCATCAAGACTTTAGAAAATTCATCCTCGCCAATGACGAGCAGCAAAACTTAGCGTACATAGGCTCCGTGCCTAAAAAGGGCATAAAACAAGTGCGAATTCACTGGCTTTTGGATCTGGTTTCCATGGAGAGGACAGATGAGCAACTTGTAACCTACAACTTTACATACCTCGATGAAGCAATGCACTTGCTTTTAGGGAACGGTTTGAGGCCTGGATTTGAGCTGATGGGAAATCCATCAAACTTCTTTTCAGATTTTGATGATACTACACAAATTTATGCCTGGAGAGATCTTATAGCAAGTTTGGCAAGACATCTCATAGGTGTCTTTGGGTTAGAGGAAGTTTCCCAGTGGAACTTTGAATCTTGGAATGAACCACAAAATAAACATCATTTTGATGGCCTGCATGTTTCCATTAAGGGATACCTCATGTACTATGATGCTTGTTCCGAAGGACTGAAGATGGCTCATCCATCTTTACAATTAGGAGGACCTGCCACAGGGTACCCAGACACTCATCCAATATTTTGGTCTCTACTAGAGCACTGCAGCAATGGTACAAATTTCTTCACTGGGGAGAGAGGGGTTAGACTTGATTTTATTTCTTTCCACATCAAAGGCCAAGGACACTCTATGACTATTTTACAAAATGAAACAGTGGTTCTAGAGGAAATAGCTCATCTTACGCCCAAATTTAAGACTACACCGATATACAATGATGAAGGAGATCCACTGGTTGGTTGGAGCTTAGGTGAAGAATGGAGAGCAGACACAACATATGCAGCCATTGTTGTCAAGATACTGGCACAGCATCAAGATATGTTATTAAAAAGAAATTTCAGTGTCAGATATAACCTCCTGAGTAATGACAATGGATTTATTAGCTACCCACCATTCTACTTCCGTCAACGTACACTGTTGGCGAGATTCCAGATGAACCACTCTCATCCACGGAAAGTAGAATTTATCAAGAAACCCATTCTAAGTGTGATGGGGCTTCTAGCACTTTTAGGTGATGAACAAATAAAGGCCTCTGTAAAATCTGAAATCAGCGATCAGAATGATTTTGGAGTAATGGCCACTATTGCAAAACCTGATGGAATGTCTACCACTAATGACTGGGAGCTGGCAGCTGTGTTTTACAACAGCAATGATACATCAGGGAGAACTTCTGTTTCACAAATAAGTGTATCTGCTGTGAATTTTCCTCTGAGACAAGATGTGGCATTTGTTGCTTATAAGCTGGATAATGGCAATGGCAATCCATATCGTTTGTGGAAGGAAATGGGATCTCCTGTGTTTCCAAGTGATAAACAGTTAAATGCATTTCGTCTTCATCAGGAGCCTGTTAGAAGTCTTGGTCCTACGATTCTCTCTTCTGATATGTTAAAGCTTGTGCTGACCCTTCCCTTACCAGGAATAACTTTGTTGCATGTTTGTGCAAAGACTCTTTCACCGCCTCCAAAGGTTGAAGGAGTACGGCTCATCCCTGTGTCTTCTTATGAAGTACTTGTGACTTGGGAAGATGTAGAGTCAAGATGCATTCTCTCCTTCAAAGTCCTCTACTCCGTCAAAAGTTCTCTTGGACCATTCAAACAAGTGAATAAAGTGGACATTATTTTTACAAGCTTTCATCATCTACTGTCTCAAGAGGATCGGGAATATTCTGTAGGCTGGTATTCCATTGTGGCAGTGGATTATTGGGGAAGGCACAGTCCAAGTTCCTTACCAGTCGTAATCAAGAGAACAAGATAATATCGTCACATAAGAAGAAACTGTTTCCTTTTAGAAATAGTTCACAGTTCATCACAAGAAAAAATAATGACATAAATAGTAGCGCTACTTAAAACAAGCTAAGGCGAGCGGGTTTTAACTTGTCAATGTTTACATGGCACTAATTTGTTTTGAAAGTTATGCCTCTATAAGAAAAGTATTGTATCGAATAAACACAACTAGAAATCTTACATCCATGTATAATATGTTCCTAATAACTGTATTAAAAAATTGTATTAAATGCTAAGTTCTCGCTTGAAactttcgtctcttcccatgacaccccgcgcgcctcaatcaattctcatatccaatcttctctcaccccctaaaatcgtaaataacgaataggtacgagtCTGGGTTTTTACTTTATCTGTGGCGAACAATAACTTGAAAACGATAGGATGTGAAACAATTGCAATGATGCAAATAACAGAGAGAACTTAAATGTATGCAAAGGGAACATTAAATATCAAATAAAAAGTCATATATTATCACAATGGGCTCCTGATTAAAGTGATATTAATCGATCATTGTTTTTTGTTTGACCGATGTTTTTGAATTTGACACCCTATCAGGGGCATAAATGGCGACGCCGCAGGTTATCCCAACAGTTCCCcccggggtgggtactcccatatatgggctatataggtatgtaccgcgagatagggtatcatttattcctcattttgcattgcgtttccg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21200 all species →	Glyco_hydro_39_C	Alpha-L-iduronidase C-terminal domain	Domain	Interproscan
PF01229 all species →	Glyco_hydro_39	Glycosyl hydrolases family 39	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR049167 all species →	Domain	Alpha-L-iduronidase, C-terminal domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051923 all species →	Family	Glycosyl Hydrolase Family 39	Interproscan
IPR000514 all species →	Family	Glycoside hydrolase, family 39	Interproscan
IPR049166 all species →	Domain	Glycosyl hydrolases family 39, N-terminal catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12631 all species →	ALPHA-L-IDURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01217	IDUA; L-iduronidase	EC:3.2.1.76	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.