Gene detail

Detailed information of PcrG007967.mRNA1 in Podabacia crustacea

Genomic Location: ptg000249l:1119228...1132282
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG007967.mRNA1

ATGGCGGTCTTTGAAGATGAGGACATGAAAGTTTTGAGGCTGGAATTTGAGTGGTTGCTAAAAGAACATGTGCCCAAAGTTTTGACTCAGCTGGGGACCATTCTTCAGGAATGCTCAAAATGTTTAAAGTTCACAAGTATACCAACAAAATCACCCACAGGTGAATTACAAGGGGAAGTAAAGCCACAAGACTACTTCATGCTCTCTACCCCAAACAGTGACACACTTAAAGGTTATGTTGCTGTTGAAGGAGAAAATATTTCAAAAGCTGACCTCAAATTTAAACTTCCCAAGGTTTCTAGCTCAGGCTTTCGGGTATTTATAAGAGAGCGCCTTCCATGGAAATTAAAACAGATTCAAGATGCCATTAACTACTTGCAACTTGCCATAGAGAAAGTTGAAGAAACTAAAGGAAACTGTAATTTCTCTTCAGGAAGAGAAGTCAGTAAGGTTGTAGATGAAATAACAAGTTTTTTGACCAAAGGAAAGTCAAGGCTGTCTTTGCCAGATAAAACTCCTGTTTTAGATATGTTAACTTCTGGAGACCAGAGAGTTTTCAAGCCTGGTCTACCAGATGATGTAGTCACATACTTTTGTCTCAATAGTGACAAACTTGTTCTGTCAATCTATACTTTAACAACACTTCCAGTACCACCACAAAGCTCTAAGCAGCCCCAGGAGAATGACCCTGTTGGACAAACATTTGAATACAATGGCAAGTGGATGGAGATTACAAGTCACTTTGAGGTTGATTGCTCCATTCCCAGACTCAGAGATTCAGTGCTACTCATTGGAGCAGCACTGAGATTATGTCAACAGTTAAAAGATAAGTTTGCAGTTTTCTCCGTGCTAGTCTCAAGATGACCAAGTCATTTATTTTTAATTATTATTAAGTGTTACTCTGGATTTTTTAAGTCCCATCTATGGATCACAGAAGATTATTTAGTTTATTATATGAGTGCAGCAAAGAAATAAACACTATAAATAACTAAACTTCAGTCAAAGAAAGTGAGGGATATGTACTGATAGTGGAATAATTATTGTTGATTTGGAAATGATAATTAATTGGTATACATACCTCTTTCAAAGTCAGTACAGGGGATCGGGTAGTTGTTTTTTAATGCTGTCTCTGATTAAGAAGAACTAAATGGCATGTTTTACGTCATTTAAAGCTGAAAATGGATTTTAAGTCTCTTTTACTGAAACCATTGAAAATTGGCATTGACTTAATCAAGTAAGTAAATCtcattctctatgcacaacttgtttatacccgctttcagtgttacgtgcatagcggatgtctttcgccatccatcattcgacatgcttagcaaacaagacagatccaaatccaccaatcacagcacactgacatgaccttttgaacttgtggctcatcatttgcatagaagtgacatgaaacaaacatcggcatgcatttgttgtgattggctgatttcagacagcacttcgaaagatgatatcgaaagatgattgtcgagtgatgtcgaaagatagccgctatgtacataacactgaaagcaggtgtaaATATGAAGTGAAATAATCAAGTTTGTTCTTTCAGTTGAGAACTAACTCTACTTACAACTATCATTGAATAATCAAACCTTGTTGATGTCATTGGAGTTTCTttacagtgcggttgctgttaccggggtcacccagataatgttaaccaatcgcaaagcagaacagaaaaaaaaaactgtcatttcttcttcagccaatgaactgctgagaacagagcaatgaaatttcgacttatttgctggctgtgaaaacagatcaatagaagttttggctgtATttaactttgtatgggtgaccctggtagctgtagtttcactgtaTACATAATTGTTTTTCAAATTTATCAATGCTTTTAAGACTTTCTTTACATTGACATGTAATTTCATTTAGAATTTTAAAATTTTTTCATGGAAAATTCTGGAGAGTTTTTCTAGATGAATTTTCTAAATGTATGTGTCTGAAAGATAAACTCTACAAATATCTTAACAACCCTTGTAAACGTATCATTATCGTAACAATGTAATAAATTAGTATTACCGGTAAATATTGTAACTTTAGGAAGTATGAGTTTCTTTTTATTACAACGTGTACATTAGTTATTAAGTCTTTACAATTGAAATATATTGCCATGTAATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10259 all species →	Rogdi_lz	Rogdi leucine zipper containing protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028241 all species →	Family	RAVE subunit 2/Rogdi	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13618 all species →	LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043291 all species →	Cellular Component	RAVE complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24628	ROGDI; protein rogdi	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.