Gene detail

Detailed information of PcrG008876.mRNA1 in Podabacia crustacea

Genomic Location: ptg000290l:925056...974995
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG008876.mRNA1

ATGGGTTGTGGCCCCAGCAAAACGTCTCAGAGAACAACAGCAAGCGGTGGAGCGAGAGGTGAAATTCATAAAAAACCCTCTCCGGTTATTGACAATGCTTCGACTGTTCAAACTGTTAAAAACGACAACGTACCCGAGAAACAGACGGGTGTTGTCTCTGAAATAACAACATGTGACGCTGAAAACAGGACATCCGAGGAACGGAACAGCTGTGTTGGGACAGAAACAGCAGAAACAGAAACCAAATCAACACAAATGACCATCCTTCACTTCAATGATGTTTACAACATCGAGCCCCGGGAAAAAGAGCCAGTCGGAGGCGCTGCGAGGTTTGCTACCAAACTAGCAAGCTTTAAACATCTAAATCCACTGATTGTGTTCAGTGGGGACTGTCTAAATCCCTCAACAATGAGTAGTGTGACTTCTGGCAAACAAATGATTCCAATTCTGAATTCTTTGAATGTGAACATTGCTGTGTACGGAAATCATGACTTTGATTTTGGTGTTGATGAGCTGATGGAGTTCCGTGATGCTACCAATTGTCCATGGCTTTTAAGTAATGTGATTGATAACATTACTGACAAACAGTTGGCTGATGGTGAGATCAAGAGGATTATAGACTGGGGAGGGAGAAAGATTGGTTTCATTGGTTTGGTTGAAGAAGAATGGCTTGTTACCTTAGCAACAGTTGACAGGGAAGAAGTTACATACCTGGACTTTGTAACAGAAGGAACAAAGCTGGCAAAGCAATTAAGAGAAGAGGGAGCAGAGTTTGTGGTAGCCTTGACTCACATGCGAGGACCAAATGATCGCCGCCTTGCAGAAAAAACAACTGGAATCGATCTTATATTAGGTGGTCATGACCATGACTATTTTGCTCAAAAGATTAATGATGTTTATGTTATCAAGAGTGGAACAGACTTCAGAGAGCTCAGTCAGATCACTGTTAACTTCAATAAAGACAACTCTTTCACAATAGATGTGCAAAAGATTGAAATAACCAGTGATATACCAGAAGACCCAGAAGTAAAATCCACTGTTGATAAATATGTTGGTGTGATGAATGACATGATGGAAGAAGTTATTGGTGAAGTGGAAGTTGAGCTTGATGGAAGGTTTTCTAGTATAAGAACAAAGGAAACTAATCTAGGAAACTTTGTAACAGATATTATACAGAATGTGACTGAAGTGGATTGTGTCATCCTAAACTCTGGAACTTTGCGATCAGATGCACTTCATCCTCCTGGAAAGTTCAAGATGAAGGATCTTTCAGCTATCCTACCTATGCCAGATGTTCTAGTGGTATTGGAACTGACAGGTGACCAGATTTTACAAGCACTAGAAAATGGAGTCAGCCAATGGCCTAAACTTGAGGGAAGGTTTCCCCAGGTTGCAGGAATGAGATTTTCTTTTAACCCTTGTCAAGATCCTGGTTCTAGAATACTTGAAAACACTGTGAGCGTTGATGATAAGCCACTTGACAGGAACAAGAAATACAAAGTTTGTACCAAGTCGTATCTTGCCAGGGGAAAGGATGGCTATCAGGTTTTCACAAAGGGAAAAGTTTTGGTGGACGAAGAGGATGGTCCTATTTTAAACACAATCGTCAGAAATCATTTCCGCTCAATCAACATTGTCAGAGGTGTGACCAAATCAAAATCTTCCCACAGGCAGAGCCTCATAATGAAATCTAAAGAATGCTTAATCAGCAGTCAAGATGTGAAGGAAAATGGCTGCAATACACCTCAACATGTCAGTCGGCGGCATAAATCATCGAATGTGATTGATGATGGGGGTCGTAGATCATCACAAGAAATCTTTCTTAACCTGGAAAAGGAACATACCAGTATTTCACCTCAGGTAGAGGGACGAATTACAATAGTTACAGAGGCAGTTGAAGATATAAATTCTGCTGCTTCGAATTCAGAAGATGTTACCAAACATCATTCTGTACAAGTGGAGTCAACAGCGAGTCAAGATGATTCCAAACCAGATGAACCAACTGCTGATCACTCAGAACAGGTTAAATCACTCCCTGATGACCCAGAACTAacaaagacagaggaagatggaggcgatgacgaaaacacggccaaacagaatgacgaagacaagaAAGCTGAAGCTGATGATGATTCTTCTACATGCAACAAACCTGAGCATGCTGGTCAAGTAGACCAAAATGAGGATACTGTAAAAGAGAACCATGAAAGCGCAACTGATGAGCCAGTCAAAGAAGATGATCGTGAACACTACCAGAGGTCACAAGAAGAGGACAGTAAAGACGTTCCTCCAACAACTGAGGACAGTGGTGTTTCAGCTGAGCAGGGAGTAGACGATTCTTTGCAGCTAGGACTCGATTTGGCAACCGAAGATGAATACTGGGATTTATGGGAGGCAGTGAAAGTGGATGACATTGATGTGGTAAAACGTCTTCGTCAGGAAAAGAACATCAGATTCACACGATTTCAGGACAACAAGACCATTCTTCATCTTGGAGCTGAGAGAAATGCTGTGAAGGTGGTGAAGTTCCTGCTGATTGATGGGAATTTGGATTCAAATGTCAAGGATGAAATATTACAGGGTGTGCCTCTCCATGGTGCAGCTGAGTATGGATCAATCGATGCTGCCAGAATCCTTCTAGAGCATGGAGCAGAGATCAACAAGCAAGACCTTATTGGAAACACGGCATTACATATTGCCTGTGAACATGAACGGAGTGAAATGAAAATATTTCTTGTTGAGCAAGGAGCAGATAAAACTGTAGTGAATTCAGATGGTGAAACACCTGCTGTCTAG

Transcript

PcrG008876.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13606 all species →	Ank_3	Ankyrin repeat	Repeat	Interproscan
PF02872 all species →	5_nucleotid_C	5'-nucleotidase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006179 all species →	Family	5'-Nucleotidase/apyrase	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036907 all species →	Homologous_superfamily	5'-Nucleotidase, C-terminal domain superfamily	Interproscan
IPR041821 all species →	Domain	CG11883-like, N-terminal metallophosphatase domain	Interproscan
IPR008334 all species →	Domain	5'-Nucleotidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11575 all species →	5'-NUCLEOTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009166 all species →	Biological Process	nucleotide catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01081	E3.1.3.5; 5'-nucleotidase	EC:3.1.3.5	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.