Gene detail

Detailed information of PcrG009075.mRNA1 in Podabacia crustacea

Genomic Location: ptg000292l:1381800...1400127
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG009075.mRNA1

ATGCAGGCTTCCAGTGAAGTAATCATGGACAGATCGAAGCCCGCTGGAGGAGAGCTTGTCGTCAGCACTTCAGCATCTGTTGACTTAACCCCGGGAGGACATGACGAGCTTCTTCAATCTTCTGCGATCTCCATGTCTTTTAAGTCGTCTCCCTCTCCAAGCCCGATAGACTGTGAGCTGGATGAGGCGGACAACCCTAACGCCGGGCTTGAGCAAGCGCTGCAGTCGTTCGTAAGCAAAGAAATACAAGAGAGGATTAAAAAAATATTGGAAGAGGTACAACAGTTGTCTGACACTGAGAAATTGTTGCTTTATCTTCGACTCCCTGGAGAAACAGCCTCAGATTCTAAAGATGACTTTGACAACAATCAAGCTCTTCCAATTTCCACAACGAGAGCAGAGCAAACACAAGCTTTCCATTGGATTCGCTGCCATTTGGAAGAGTGTGACAACAACTCAACATTGCCTAAACATGAGGTCTATGATGAATACAAAGCTCACTGTGAGAGCATGAATGCTGCACGGACCTTAAGTGCACCTGACTTTGGTAAAATTATCAATGGTATCCAAAGAAAAAAGAATGTGAAACCACCCACCCTCCCATCCCTTCAAGTTCCTTCAGCAAATGAGAAAGATAAGAGTTCAACAAATACAGCAAACAGCTTGACTGGAGGTGACAAAATCGAGGAGGACCAAACTCTATCTGCTGCATGTTTACTTGTGTGCGAGTGGGCAAACAAACTTCTTGGCAGAGTTTTTAGCACATTGATTGAGTTGGCCAGATTTCTTGTTGGCGGAAGTTATGTTTCCAGCAAGTCCATGGCAGCATTTGTGGTAATGTCCAGCAATGATTTAAGCACACCTCAGATTGGTCACTCATTAGTCTCACTGATTACTCCCTTAAAACAAGTCGAGGAACAGATGCTGCTTACACAGAAACGACGCCAGTCACAACAGTTACCAAAAAAGATTCCACAACGACAACAGCCAAAACAGATTCAACAGATTCCTGGTAATGCCATGCTACAGCAGGGCCAAGCCATATGTAATACACCACAGCCACAGTTGTTGAGTCACAAAACTCTGGTAAGCATATCAAATCAACAGAAACCTGTCCATAAACAGCCATTACACATTCAACCAAAACCAATCCAGCCAGCTCTTCAGAGTCCTCCTGCTCAAATAGGACAATTCTACCAGCAACCTACAGGCAACCCTACCACCCCACCCAGTGGATATCCAACCAAGATAAGACCTGTAACTCCATCAATGATATCCCCCACAACTCCCATCCAACCTGCTGTGCCGCAAACACCGTCACCTTTCCAGTCATCGCCCAAGTTCAACACTCCTGGAACACCCCAAAATCGTCCAGTTACACCAAGTTCTGCTAGTGCAACTCCCAGGCACACATCAAACTCGGCAGAGCCGACCCGCTTTCTTTTCACACCAATTCCAAATAGTTCCCAAGAACAGAGGGTCACAAGAGGAGAAACAAGTCCACCCACACTGCGACCAACTGCCACTCACCCAAGTCAGCTGATAAGCAATGATTGGCCCCAGCAAGGAGGGTCACAGATGGGAGTCAACGATGTACCAATGTCACCCAGTAAACAACCAAGACTGATAAATTCAAATCCACCATCAACTCCAACATCTAATCGCAGACCTGGCTCATTTGCATACCCCTTGCCATCACCAAGGACTCCTCAACGCATAGCACCACAGCAGTATGTCACTTCCCCAACGATGGCTTCTCCTCGGTGTGGTGGGCAACTGAACCCAATCTCCCCTAATGTTGCACAGCGAGGACAGGAGTTCATGCTCCCGTTAACAATAACCAATGTTGAGAATGTGCCTCAAACAAGCTTCTCACAGGGTGTAAACATGACAAGTCCTCCATCATCCTCTGCAGATGTGCATATGTCTCAACAGCATTCTAAACAAGGCACTACTGGAATTGTTCCTAAATCCTGCAGATACAGCACTGGTTCAGATAATGGACACATGCAACAAGTCTCTGTAGTCCAGACAATGGATTATTCACCAGAACTTGAGTCAATATGTAACCAAGCCACAAGCTCTTCAGGCCAGATGCCGCCACCTTCATATCAACGTAGCCAGTCAGTGCCCCCCTTAACACAGCATGCACTGGCAGATCAAAGATTTCATCCTCTTACACCACAGACCAATTCCCGTCCTCGACACCTCACACCGTCACCCATGGACACATCATCAAATCAACACTTGAATGGTTTAAAGGAGCTACGTAACAGAGTTCTCCATGGCGACGTCAACAACAACGGCTCAAGGCCAACACCTGAGAGTGCTTTCTCGGCAAGAAGAAATCTTACACCTATGCTCAATGCTGAACATGCAAATATGACTCCCTCAAACTGGGGGGTGTCACAAGTTAGGACAAACAATAACACCCGGGGAGGGGAGGATCACGAAATGGCAATACTTGATTCTAACTTAACATTTGCAGATCTCGGTCATGAAAATGATGAGACTCTGTCTGATCTCAATACGCTGGATGATGCTACAACTGAAGCAGTATTGAGAAACATTTGCAACAACACGTCAGGGGTGTGGCCAACTAGTGATGTCCATACTTGGCCAAATTCACAAGCATTAGAAATCATGGATTAG

Transcript

PcrG009075.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan
PF18326 all species →	RFX5_N	RFX5 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan

PANTHER

No PANTHER signature was detected for PcrG009075.mRNA1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09175	RFX7; DNA-binding protein RFX7	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.