Gene detail

Detailed information of PcrG009258.mRNA1 in Podabacia crustacea

Genomic Location: ptg000298l:547859...551885
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG009258.mRNA1

GTGTTTGCGCGTGACGCGAAACTGACCTTCGCTCACTGCAATCACATGACGAGTCATGTGCCTGACTGTGTATCTTGCGTCACCCAAAACACACTATATACCGGTAGTTTGTAGGATCAGTTGTTCTCTGTGGAATGAAACTACGATTTTTCTGAATTTCAACAACTACAGCCTGTCATAAGGGTTAGAAAATTGTTGCAGAATGACGATAACACCGAAAAAGAACTCTGAGAAAGTGAAAGTGGACGTTAATAATCCTAAACTTCACCTTTGCTCGGGCAGCAAGTTTGTCGACTATGAGATCAACATTGAGACTACCGATAAGGCTTTCTTCAGAAAATGCTCCAGCGTTAGGCGAAGATATTCAGATTTTTGCTGGCTCAGAGCAAAGTTGACCAGTACAGAGATCAATGGGTTCGGAAGGGAAAGAACTATTCCAAGTCTACCACCAAAGAGGTATTTTAGTAGATTTGATAAAGAAGTGATAGATTCGAGGCAAGAAGGATTGCGGGATTTCTTAAACGAGATTGTCAAATTCACTGATTTCCTTTCATTTGCTGGTCTTCACTTATTCTTACAAACACAACTTCCGATAACAGAAATTGATGGCTTTCTTGAAGGAAAGTATGGAGAAAATGCTTCAGTTGAGGAGTTAATAAATTCCCTAGAACCTGCAAATTCAAGTGAGGAGGATAGAACACCTTATGCATGTTCAAGCGAAGACTGCACATTGTTAACTTCATCTAACTGGGACATTATTTCAGCAGACAACATTTCCACTCATTCTGAGACAGATGAAATTAGTTCCGAAAAACATCTATCTGACAGCTACAGTAGTTCTTTGGGATCTCTTTCAAGCTCGGCAGAAAATAGCACTTTCATGTACACTATGTATAGATAGCTGCAAATTAATACATAAAGAGGCTACATTACAGTGTATTTTCTAAATTTTCAAGAGTGTGCCCCTTTTAATACACTTCGGTGTATATCTGTTCTGGCAATCTTGATAGCATCTTACCATCTACTTGAAAATGACAAGATGCGACGATGTTGCATTAGAAACATTGTAACTTGTGAAATGCTATGTTTACTGTACAGTACTTAAAACAAAAATACCCATCATGACATGTCACTACCAAAATACTGCAGCAACTTGTCTTTCAAGTCAGTGGAATGGTAGATAAATTAACAAATGGTATTTTTGAGTCAGAAACACTTCATTAATCTTGCTTTTTTTCGTTGCAAAATTTGTATTATAACAATTAAGATACAATAGTGTTATTTTTATTGTAAGTTATTCACAGTTGATGTACAGATACATAAAATGAAGATAAAATTTTATTTTTACAGTTCATGTACAGAGATACATATCTGAAAAAGACAttaatataattattttattttaattttttttaTACATTGTTATATACAATTAGATGTTAAATTATTACCAATATTAGGTTTATTTATTGTTCCTAGAGCCAAAACTTGAGTCATAAAaatgtggttctaacttttgagtctgtggctaaattcctaattgcagccatccaggtgaaacctattgagctgtactttcatgtgaagctgttAACTTTAGTTAAAGTATAAAGCATTTATTGCACTTGTACTTTTATTGAGGGAATGGGCTTTTTCACAAATTAATTGTAAaacaacaacaacaacaatcaaTATTTCTTAAGTGTTAAGATTTCGAGCACTATTTTTACATTATTTCTTTTAATATTACTTGCTAATGCAAGTGTTTAATATCAATATAGGGTTCTACTACTTCCGACAATGAGGCATTAAATAGTCAACACTGTTGCACTATCAATAGTAGTGCACTTTTCATTGAGCATCCAATCTCTGCTCtattagtagcttgtaaataattacacaattcagtatttttactgcgatgtaattaataataaaccagtcttcttctTCTTCAGTCTTCTTCTtctgctcaagtcaacgactactaaatacggtacatttttttgtcactgtcaatcgtcttagcagaactctgaggaaagagcatttattgcaattttcagaaacatgagaactctgctcaagtcaacggctactacgaaaaacgtttttcactgccatcaagtatcttagcaaacctctctcaggaaacagaagctccctttaaccgggtcaagacgtcgtgtttgtcagttgtgatcggtagatttctatccactttgtttctgtttttcaaggttcgttagctgtcgccataattatgattgatgacagcaaaaatgtattttgtagcagctgttgacttccaagcag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR043544 all species →	Family	Sorting nexin-10/11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46209 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17924	SNX10_11; sorting nexin-10/11	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.