Gene detail

Detailed information of PcrG009573.mRNA1 in Podabacia crustacea

Genomic Location: ptg000310l:105325...115996
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG009573.mRNA1

ATGGTTTCCTTCCTGCTATAAAATTCGTGATTATTTTCAACACCTTTTGTAAAGAGCAGAACTACTTCCAGTGGATCCAGCTGATTTCAATGAAGAGCGGAACTATTTATAATGGATTCAGCTGAAGACAATGAAGAGCTTCAGTTTTTCCGTGAGAGATGGAAAGCAGAATTAAGAAGGGATGTTTTGGATGGGTCATCAAATTTTGAAGTTGAGGGGGGCAACCTGAAACTCGAGCTCTGGAACAAAAACTTCCCGGGAGTAGTCCATTGTTTTGGAGGGAAAGTGCGTCAGTTAGGAAATCGACTTCGTACTGTGGAATGTTTGAGGTCAAGTGATGAATCTCCTCCGACACCGGAAGACAAATCGACTGGGCCAATTGCCAAAGAGAATAATGAAATAGTGCTATTGAATTTACCTGAACCCAAAGATGTCAGTGGCTGTGACTTGCAACAAAGAGTACAGACCAAACTACCGACTTGTATTAAAGAAAGCAGAAAGAGCCTTTTAGATCAGCTCATTGAAGACATAGATGAAATAACAAGCATTCCTTTCTTTGACTTGAATTTGCCCAAAGAAGTGGGAATACAGATTTTTAATCACCTTGGTGTAAGAGAGTTGTGTGTATGTGCACAGGTCAGCAAGTCCTGGAAAGTTTTGGCAGAAGATGAGCTGATTTGGTTTCATGTAGGATGTAAGTTAGGTTATGTACAGGAGAGAGACTGTGCTGCAATAGACAGAGTAAATTGGAAAGGTTTTATACGGGACAGCATTTTGGAGGAGAGGGAATTAAGAAGGAATTGGAAGGAAAGGATATGTGGATTGTCCAGTTTGGAATTTGAAAGAGGTGATGTTTATGCTTGGCACACTAGCTTAAGTGCATCACCACTATGTCACTGCCGTTGTGAAGGGTCTGTGAAAAGTGTTTCATTAGCAACAAATGGACCACCTGCATTTGCAGCCATTTCAGATCATGAGCTCAAGATACAAATGAGTGACCCCAATGGTCAGTGGATGTGTCTTGAATCTAGGAATTATGATGACAAGGTTGGCCATGCCATGTTTATTCCACACAGCGGTACATATTCCTCAACTGACCATGTTGCTATAGCAACCCAAGATACTGTGTTGGTCTTAAAACCAGGCAAAGGCTCTATGTCGACATTGGATCATGTGATTGGTGGAAAGCTAAGCTGTATGGACTGTACTGCTGACCGCCTTGCTCTTGGAGTAGGCTCATATGGATATGGAACACTTGGAAACAAAGTGCGTCTCTACTGCCTGGAAACTACAAAAATGGTCTCCGTATTAGGCGCCCACTATCGCGAGATCACGTGTCTTGATCTAGCCAATTGTCCTCCGCATTGCCTGGTGACAGGCAGCTATGATTGTAGGGTACGGGTTTTTGACCTGCGCAGTGAAAAGATGACACTTTCATTTCACTTGGGATACAAACGAGCGGTGACTGCTGTGCAGATGGATGACTGGAAAGTAGTCAGTGGTGCAGAGGACGGGACATTAGTAGTCTGGGACCAGCGGATGACGACGTCAGCTTTGTGGATCACGCATGCGCGGCACCCTGTAAGACTCTGTAAATTTCAAGGTTCTCGTATGATCACGGCAAACATTCCAATTGATAAAGCTCTGCGCGCGAATCTTTGGTACGCGGACGATCTGATTCTTCATCGAAGACATCGAGGAGTCATACGCATGTTTGATTTTTCGGTGAATAATGCAACTGAGGGAATCCCGAAAATTTGCTCATCAAATTATGACAATACAACTGGCTATAACTATAACATAAAGCTTAGTGTGCCATACGACAACATAGAGACGTAACTAGGGCCAGTAGAAGTGTACTAAGCGACCTGTTGTCCCGGCCTGTTGTACTGCAGCATCCGAGCTCCGTTAAGAAAAAAAGATTCCGCATGGGACATCGGCAACACTAACGTAAACGCAGCCCGTCAATTTGGCTATATATCCCAACGTGTTCACAATTCTTACTATACGAATTGGCGTTTTCCTGAATGGACACCCTGATTCCTGCTTTGAGGTAACTACATATGGTACATGCTTCAAGCTGCTGTGATCCCGGTAGTGTGACACTGGGGTGGTTTTTTAAAACAATGAGTGGCAGCTTTTGGACTAAACGATGAGTTATTTAGTACCGGCTACCGGCAACTAGCAGAATCAGCCTCACCTCCCTTGTATAAACAAAGTCCGTCTGATTTCACGGTTCTGCAAATCTCGCAAAGCGAGGACTACTTTGAATGCAAGGAGTCAGGTGCACCCGTCCTCATCAAGGCACAAGCTAAGCCAAGTTAATGAAAAAAATAATCTTAAAGTTCCGAGCAGATGTGTAGTGGAAACCCTGGATGGAAGAATGACGCAAGTAGTGCTAGCATGTACCAGGCACTATGTTAGCACAAGAAGAAAGGTCCTTCATTAACAGTTGACTGCATACATCTGTAGTAACTACGGGAACCTATTACAGCGGTGCTGataaaagcgtgaacacctaaaatattctggaatgtttattgtattgtaaccaatcacaggcgagatcatcagaccacaaaaaccacaaACACAACGAATATGTTTCCATCGGTCACTGAACGGCCTTGTATCGCGTTTTGTTTCAGGATACACGTTCTGCCGTACCCAGTACATTGCTTGAGCTATTTTATAAAAGAAAAAAAAATTAAAAAGCGAACGCAATGATCAGTTTTTAAAGCGAAGAGGCGGTCATTTCGATACGGTTGAACTATagccacaagttcaaaaggtcatgctagtgggccgtgattggtgcgtttcgatccgtcttgtttatttagcttttcgaagctggatgtcaaaaaatagcatgtaacactaaaagtggctgaaaaaagtacaAATTCGTGGTGTTTATTACTGGTAGCATAAACCTTGCTGTTAGCTTTGGTAGAAATTTTCTTTTGGCCAGCAATTACAACCCTTGAGCCAGCAGAGGTTTCGTGATCGGATCAAATCGGAGGGCTGCAAATATCGCCGACGAAATTCAAAATGTTCGAGTAATATTTGGTGCAAAGTAAGCAAGTTGTAAGTTTTTATTCCTGAAAGCGTTTATGTATGGTCATTTGATATTTGGGCGATTGCAAGCAATGGGAAGCCAGCTGTGAGCGGATTTAGAAAAGCCGAAAACTTCCAACTGACATCAAGGACATCAAGCGAGGGAATATGTTTGCACCCGATTTGCATATTTTGAAAAATTTGAAAGTTCGCGCCGCGAAACCGTAGCATCGACCCGGGCGTATCGCCTTTTCAACATTCGTTTATCTAAAATTCGGTCAAACCTTTACTTCGCTAATGTAGTGCATTCAGTTCTCACATGGGAGAGAAGAGAAATTATTTACTTTTTAGAATTCCTGCAAGAAAAGACTGAGGGTGCATTTTGAAGCAAAACAAGAATATAAAAATTTGTTCCGTGACCGATGGATTGGTTTTCTGTGGTTTCCGTGTTCTGCAGATCTCGCCGGtgattggttacaacacaataaacattccagacatatttcaggtgttcacgcttttatAAGCACCGCTGTAACAGCGTAGCCACATTCACGGGCATCGTGGACTGGCTCACTGCGACCTTCTAAAcgcagtggcgagagcacttacattccaacagtgtggcccgcgggttcggttcccggaccgacgttatatgtaggttgagtttgttgttggttctcgtctttacttcgagggttttcctccgggttccctctctctacaaaaaccagcacttctaaattccagttcgatcggaatccgacagccacggtttgtcagtgcaaccctcataaaccaaacttgatttatttTGATTTATTTCATACAACTTTATCGTATTGATCCAGACGATAACACCTTCAAGGGCAGCCAGGCCCATGCAACCATTGTCAAACATCCTTTAGGATGTGAGCACCCTAGACAGTGCCTGGTCCACTTTTAATCTCATGAAGCAGTTATGGTGCATGAACTACGAATCAGTGCTTCAAAGATCACGTAAGGTGTTAGAGTTTCAGTCAGTTATTACAAGATGAGCGTCAGAAGAGGAAAGCTTCTCTGTGAGGTACACAAAAGGAATGAAGAAGATACTTAGGGTGCAAGAACAAAGCCACGGGCACCAGGTCAGCCAGCCATACTTTAAAGGGTATAATTTTAAGCCACTTGTTTCACGGTCAGATCCCTCTAGTCCAACAACTATGCCAAAGTTAAGAAAGTTTAACTGTAAATTACGTGCGTGTTAGTAATGCATAACAGCAAGttaaagggacactatcacggctgatcatagaaattccaattttctaatttccacattatagtgccaaatgccaccaaatacacgcataaatttgataaaaatatcacacaaagcaagttaggacaggtactttgtggtaaaagtacaggattgcaaggatggtagtggattgcaattgatttttggacaggatgtccagaaatcaaacctggcattctggtgaaattttgaacctttttttggtcactttttttttttctcttagttgaaatatctttgcttttaccacttatagcactttttgcttcccatcgcaagacaataaagcgcaactgtggcaagctataatccatacttataaaaaaaaaaaatgatatctcaggcgtgacggtgtccctttaaGTCGACAAAGTCTCCAAGAGAGCGTTGTGTATAGCCAACAGGAGGCGGACAGTTATCTAGTCTCTAAAGGCGGCCTTTTCCCTCCGCCGACCAGATGGTTAAATAGCGTTTTTACGTAACCGACCGTAACCGTCCCATATCCAAGTGATGATAGACGCCCCTCTCTTCCGCTATTCAAGCTTACACCATCAGTTCGCCGTCTTCAAAACCCCGTcctcgttcccagtgtctctcatcttcccgcccccaagagcgagagggcgggaagatgagagacgctgggaacgagattgTCAAAAGCCAAGGTTAAATTCTCGACCGTCATCTTATGGCTCAGAGCCGAGAATGCAAGCAAGTACAGTCGCCAGGAACTGTCTACGTGGGCGTTTCTTTTTCGATTTACAGCAATTTGATCCATGCTCCATTATAAACAAATTACATATAATAATGCAATAATGTCAGGAGCCCATAATGTAGATTGTTAACTTTGCCGGGCAGTTACTTGAACAAGTACCTTGTAACCAACTGCTAACTTATACTTTCAAAAAAGCATCACAAACTGAAACCGTTATGTGCCCGTTATCTGCTTAGGCAGCGTATCATGATTTATCTGAAGAACAGCAATCAAAGAAAAGAAGACAGTTTACATGTACTTCATATGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19855 all species →	WD40 REPEAT PROTEIN 12, 37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10264	FBXW8; F-box and WD-40 domain protein 8	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.