Gene detail

Detailed information of PcrG009607.mRNA1 in Podabacia crustacea

Genomic Location: ptg000310l:553608...565897
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG009607.mRNA1

ATGCAAGATGATAGGGAGGAGGAACAGATATGCGCCTCTCGTTTGGATGATCTGCGTCCATCAGCAGCTCCGGCAAGTGAAGATTCACTTGAAACAACCACACTAGAGCCAGAAATAGTGTCATTAAAAAGGAAATCGGACGAAGAGCTGGGCGGAAGCGACCAAAAAAGACGGCTGGTGACTGAGGAAACTCCAAACAGGGACGAAGTCACTTTGATGCGCACAGACAATGCAGGCACTGAGGAAGAAAACGACAGTGAGGGAAAAGAAATGTGTGAGCCTTCGGAGCCAGAGCGAAGAGTAATTATTATGAAAGGTAATTTGCCAAAATTGGCTTTACCAGATGGTTGGATAGCACTTAATCACCGGAGTGGTGGAATTATTTATCTCCACAAACCAACAAGAGTGTGTACTTGGTCTCGTCCTTATCACATTGGAGGTGGAAGTGTTAGGAAACATGATGTACCACTAGCTGCCATTCCATGCTTTCACCAGAAAAGAGGACTGGCTTTGGAAAAAGAGAAAAGTGGACGCACAAGTGCAAAGGACAACAACTCCAGTTCCATTCCTGTAAACAACGGAGGTTCAATTTTGAATGCACTGAATATGGGTGAAAAAAATACAGAGGAAGGAACTTCAAACGAGCGTACCATTAAAGAAAACACTTCTGTCCAAGAAGGGCATGAAAGAAGTGGATTGGATGTCATCGTGACCCTAACTGATACAAATGGTGTGACAGAGAAAGATGGCGTGACAGTGAGGAATGAAGAAACAATGCTAAATGGTGAAATGGAAGTAGATGCTGTGACAGAAAGTAACAGTCTGACCGAACTCACATGTGGTGTGACCGAACATGCAACACAACACTCTCAAGCTGTAGAGGATTCTGAGAAAAGAGTGCTTAATGGTGAAATAAAAGTAGATGTCATGACAGAAAGTAACGGTGTGACTGAAAGATGTGATATGACAGAGCAGAGTAATGTAACACAACATTCCCAAACTGCAGAGGATTCTAACTCTTTGGGAAACCAAGGAAGTTCAGGGGAAAAGGCTGCGTCAAAACAAGAAGAACCCGCTGGAAACAACAGCAGCAGCAGTAGCTTAGAGTTATTAGATGCTGGAGAACTAGGCACGTACTTGTCAAATATCTGGGAGTTCCAAGCTCTTACCTCAGACCAAGAACGTTATGCTGTAATAGCCCAGTCACAAGCTGTTGATGATCTTGAGTTGCCATCATCTTTGGAATGTCATCCATATGCTGTTAAGGGGCCAGAAAGCAAGAAGCAGCAAGGCAAAGACTGTTTGCTGAATGCTGGTGGAAAAACCCCAGTGGCAATTTTACATGAATACTGTCAGCGCGTATTGAAGACAAAACCTGTGTACCTGTCCAGTGAATGTGAAAATGCTGAAACTCCGTTTTTGGCAGAAGTGCAGATAGATGGAATCAAATATGGATCAGGAATTGGATCCAGTAAGAAACTTTCCAAACAGATTGCTGCTGAGTGTACTCTAGAAGTGTTGTTACCTGGAGCTTACAAGAAGATTCGGGATTACCAGATTTCGGAAGCTGAGCTAGAGTTTTTTGACAAAGTGGACATCTTGGATCCGAGAATTCCTGACTTTTGTAAGAAGACAACCCTCCCAAACCCCTCGCAAATACTTGAGGAGTGTTTAAAGAGAAACCAAGGCATCTGTTCATCTTCAATTCAGTTCACCACCGTATGCGGACAAGACAGAAGTCTGTCATATCAAATAACATGTGGGAAACACACAGCAATGGGTCCTTGTAAAAACAAACGACTTGGCAAGCAGTTGGCCTCACAGCAAATCTTGAAGAAACTCCATCCTCATCTCGAAAAGTGGGGAGCATTGATTAGAATATATTGTGACAGACCTTCAGGCTCCATTAAGAAGTACAAAAAAGACGACAGTAAATCTACCAGCGAGCAAGAATACAACTCTGATATGCTTCAGAATAGTGATTTGTTGTTACGACTCAAAAGTGAAATGAGGAAGCTTTATTTGGAGGCGGAGAAAGCCAAAAGCATGGACAGCAAAATGAATTCAGTCGAGCCAGTATTCACTGTGGACATGTAA

Transcript

PcrG009607.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005483 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR040375 all species →	Family	Microprocessor complex subunit DGCR8	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482 all species →	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0070877 all species →	Cellular Component	microprocessor complex	Interproscan
GO:0070878 all species →	Molecular Function	primary miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18419	DCGR8; microprocessor complex subunit DGCR8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.