Gene detail

Detailed information of PcrG009692.mRNA1 in Podabacia crustacea

Genomic Location: ptg000310l:1860488...1896763
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG009692.mRNA1

CGAAGAACGAGTGAAAGTAGTCATCATGGCCGCTGTGATTCAACGCCTTTCGAGGCAGGCGTTAGTGACGTTTATGACGACCGATACTGCTGCGTTTTGGTCTAACTTTGAAAGGTTGAAAGCCATGCTTGATTCAGTTACAGCAGAAGACATCAAGCTTGCTGTTCCAAACCATTTTGAGCAAAGTAATGGAAGCTTCACAGGAGCACCTGCCACTCATGTGGCAATATTTGAGTGTCCGTTCTTTTCTTTAGGAGTATTTATATTAAAAAAAGGAAGTACAATTCCTCTTCACGATCATCCTGGAATGTTTGGTTTGTGTAAGGTTGTTTATGGCAAAATATCAGTGGAGTCTTATCAAAGGCAGTCTGATACTTCATTAAATGGAAGGACGGACGGTTTTTCTAAGCGCCCACTTCATGCACGTAGACCAGGGAGACTGATCAGATGCAGAAAAACAGAACAGTCTTTTGATGAGAGTAGTGGAAGCTGTGTGCTTACACCAACCACTGGGAACCACCACACTATTCACAATGTTAGCCTAGGACCATCAGCATTTGTTGATATCCTTGGTCCACCGTATGCACAAGACAAAGGACGAGACTGTACATACTATCAGGAATGCACCCCACCAACATACCAACAGGGTACCCCAAAAGAGGAAGAGAACAATGAAAGATGGATCATTGAGATTTCTCCTCCACGGGACTTCTTTTGTGACACTCAGCCTTACAGTGGACCACCTGTGAACCTACAATTAATATCTGAACCTTTAGACTAACAAAAAGTCATAGAGCACTGAAGAGCAGAGAGGAGGGTTTTGTACATCCAAGATCTTGGAGATCTCCAGCGAAATGGCATGATAGTTCTCTTACGCTGAGTTTATGGAAAGAAAAACTTGAAACAAAATGAATGTATTTTTAACTGGAGGTTAATGTGAAGTGTGCATGAGATAATGTGCACAGAACTACTTATGACACCCACATGCATAGGGGAAAAATGTCACTTTAATTTAACATAAGTCTATGTATAACATGTATAACATATATTTATAAACACCACATAAGTTACCATTTCCATGTGTTTTAAAGGAATAGAGTTAAAAGTGCCTAGGTTTAATACTTCAATTGAAATAGATATGTTTCATTGTCTAATAGCATGATATAACAAGTTGAAATATAAGTTACTTGAACTTCAATAGCATCATGTTGTTATTTTTTAATTTTCCTAACTAGAGTTAACTGGTAGCATGCAACTTATTTTTATGAAAGTAATTTAGGGAAAGAAAGTATTAAGACACTTCTGTTTATATTATTGTGGTATTGTCATGAAAACATGGGAAAAACATGAAAGAATTAGCATTGTAAACctgaattatcttcagttgtatgttccgaaatatttcagtacacaaaggattacggaaaaaaggaaggaagaaatgtggcagatcctgttttcaagatggaggaaggagtgatggcagcactttgcaaaaaataagagctattgaatgagaatgcttttggctctttgtgatgacacaaaccaattttcataataATAATTATAATCCGGTTATTTATTTATCTAACATGGAATGTCCcaatttacagtgtgagttctcaaaccggggcaccttaaaaaattaaccaatcaggacgttatttgagaacaaaagatagcaacttttttcattaacggaccaatggcattgacgaacatgaacaatacttttagaacaaatgtgaaaaCTCGACAACCGTCACAAGTAgatgcggtcctctcagaaaacatgccttcgttttgattggttcctttcgatcctaaattttgcagcacacctgaagcagtttgagcggatgttgattttttccaaatactaggcaaattttagaggtaaaaaagaattcgtcccaacaatcaacatcagtattacaaagaaggtaaaggagacaagttgacaaattaaaaaaaagcaaacctttattgatcctcatttttacaaggtgttgaattagtgtacgaaataaacatgaactagccgtcaagagcgcatcAATGAatcttacagtaaaatataaacagctccaatacgagttgcgaatatgttgcttcaaaacgcatataggaaaaatcgttttataaaatgtagtctccctgtttataagattatatgcttacagaggaaaagattgggtttacttctaaaatgtatatttattgaaaaacgatagcacaagctagaaaagcgactataaacagaagacatcagcattttctaaacatttccccgtatgaatccctatattatgaacggtagctcccaatcacggggtgtctggaaaacctgaatagtgaatacttgAGTAGAAGAATGCGATAgaccgtcgggtgatacatatatttttttcgcacaagctggcacaagtgtgctggtgataaataaatttcttcccTTCTttgaaacattttataatttaggatcaaaagtaaccaatcaaaacgaagacatgtttcctgagaggtctgcatcTACTCGCAACGTTTGTCGAGttttcaaatttgttcttaaagtattcttcgcgttcgtaaatgtcattggtccgtaagcgaaaaaaagttgctatcctttgttctcaactaacatcctgattggttaattttcgcaaggtgccccggttcaagtacttgcactgtataccatttaataaaaataataaacggaaaagattatcgctattaaattttgcacaccctaccatcttgcattttataacgccaccgcattgtggctattgttaaaagaagagcttcttttgcttggaacaatagggcaaggcattgatgccatgaaatgcagaatggtggcgcacgggaaattagaagcgatttttagtgtcaatgatttctgtttcttataattattaatagttatatattcctGCGCAGTAAAATTTGTAATGTAGGTGCTATTTAATCAATAGAAGTCTAACTTGCCTTAACAATATAGATTCCCTTtaaaattctgcttacatttttgaatagctttattcattggagatatattaaagtttttagtgatcatattacagagtaaagaaaatttagatgaaaaatatgaatgtgggttatgtcatccatgttgtatttgaaatgtgcgattcttggTGCCGCATGAAttttcttctggtttgccaacttttttacactgacttctcagtgttgtgcatccatcatttttctccttcccgtcattttccatgtttccttttttcttattagagatgagtgggacaagtaagATGTTTAGCCATTAAATTTGGCACCACGACTCGTGGATCATTTGTCAATTTTTGAAATGGTGTTAAAGTCATAGAGTTGTATTGATAATTCCTAAAGGCCTAATGTAAGTTAACTTATGCAAATGATGTGTCCTTACAGACCCCCAAATATGTGGATTAAGAGATTTGTCATTGTTGTCACAAGGGAATACAAGACAATCGATTTTTTATTCAAACCATACACACTCAATTATTGTACAGATAATTAAAAAATGAAATAAAAAAGGTATGTACAGTATCTGTTGACCCAGTACCGTACCTGGCAACTGTATATATTCCTTGGGCCAAAATATTACTTTTGAGTTATAATGGCCTTTTCAAAAAGGATCCTTTCTTTGTTGTTTTCACTGATGCGTTACCAGTAAGaggggtgtaaaaagggcattgaaaaattatgattctctgcaaatcgaacactagtctcgaaatctggccgtcacaaagtactcagaatctctggcttgcaaaaaataaagctgaactctgaatctcaaattttaaaaactgagtttgggaggccaagcgaaagaaatgtaaaagaactgtcatgagacaaaactaatggcaaaggtgcaagctcttagagagactgggggcatgctccccaggaaaatctgagctgtcagatcatgtgtgaaaggccatctctggcattttgagtcgttgtcaggtacatttattgtacatttaaaataataaataaaagagaaatgtccaaactattttgtagattgaacttggcagttaactttaaagaaaaaaaccgaattacttattaatgttatgaaactctgaccaattcccggtgggaactggttttgatcgtgataacaacggcaaaacaaaaagttatcgcaatgaacaggccaacattgcaatagctgtagtgaaacttgtaatttgggtgcatagaaatcgtgaatcatcgttttgattttaagacaatgcacagagaggtacagactgcctgtaaaaagttgcggccagatttcttgatcagggcttgcatttaaattttggaattgcagtgtctgaggctgtgattttagaaacagtaaagtgtcggtctgtgattttaaagaaggatgttggcgtgtaggtgagtctcagattttaccattgtatacccctAGTAAGATATTAAATTTTTTTCACAGAAGGATGTAATCATGAGAACGCATTAGTGATGCTGAGGTATATAATGTTTGCTGTTGTGATGCTCAGTTAATGTTGACATTATACATTGCTTTCATATTACCATGCAATTTGTAACGTGTAAGTCTAAATAGTGTAATCTGCTTTACTGGGCATTAAAGAAATGTTATGTAGTAATACTTCAATGTGTTTGCTTGTTACTGAAATTTGAAATGGGGCCATAAGTTGAGGCAGCCCTAAATAAGGTGTTCAATAAAAGCAGTATAAATTGAATTGAATGAAGAGACAGTTAAGGTACAGATTTATTAGCAGTTAATAAAAGCTGACATTTCAGGTAGGAGATGTAAAATAACTGCTTATTAAAAACAGCTGCCCCCACTATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07847 all species →	PCO_ADO	PCO_ADO	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR012864 all species →	Family	Cysteine oxygenase/2-aminoethanethiol dioxygenase	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22966 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10712	ADO; cysteamine dioxygenase	EC:1.13.11.19	Taurine and hypotaurine metabolism	ko00430	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.