Gene detail

Detailed information of PcrG009728.mRNA1 in Podabacia crustacea

Genomic Location: ptg000316l:107653...175364
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG009728.mRNA1

ATGGTTGCATCTGATCCATGTGTTCCACCTGGAGACTTCCTTAATGGATCTAGTGGATTATTTACCAGCCCAAATTTTCCAAACAACTTCCCTGCAAACAGTAACTGTACTTGGAATATCACAGTACCCACTGGCCGCATCATTAAACTTACCTTCTTCAGCTTCACTTTGGAACCAGGTCAAAGTAAAGCATGTACTGGAGATAGTCAAGGTGCCCGTATTTTAATCACTAATGTTGCTTCAGATGACGGAAAACAAGATTTCCAGATGTGTGGTCAGCGGCTTCCTGATCCAGTGTACTCTGTGGGGAATTCCATCCTTGTGAGATTGCGATCTCTCAGCAATGTGTACTCGGGATTCAATGCATCTTACGAGGCGATAGATGGAGAACTACTCTGTCCAAGAGACATCACCCTTACTGAAACGTCAGGTGTTATTACCAGCCCTTTTTCCCCCCAAACGTATCCAGATAACCAGAACTGCAGCTGGCAAATCACAGCACGTCAGGGAAACCGCGTTAAGCTGGTGATCGCCAAGAACCTCGCTATCCAAGATTGCGGATCACAGCATGAGTGCATGTGTGATTATCTGCAAGTTCAAAATGGCTTCACTGTTGATCATGAAAATGAAAAAATATGTAGCTTCCCCTTCAAGATCATAACATATTACTCAAAACTCGAGAGCTTGAAGGTACTGTTTGTCTCTGATGGTACAGGCACCAAGCTGTACGATGGATTTGAAGCAACTTACACACAGCTGAATTATACTCCTCCAGTTTGTCCTTCTGAAGCGATTCCTATTTCTGGGAACGGAAAATTAAGCAGTCCAAACTACCCTGTGAGCAATTATCCTGCGCCCAGGAGTTGCTCTTGGATCATGACAGTACCATCTGATAAACAAGTGAAGTTTGTATTCACTGAATTGGCGCTTGGGTTATGCGAAGACGCTTGCAGTTCTGGTAATTGTACCTATGTGGAGCTTTATGACGGTGCTTCGACAAGCTCTCCTTCGCTTGGACGATTTTGTAACGGCTCATTCCTGCAGGATGTGTGGTCAAGTGGATACCAGATGTTCGTACAGTTTCGTTCCGGTTCTTCACTTGATCGAGGATTTGAAGCGGAATATTCAGTGACTTATCATACAGATCTTTACAAGATTAAAGAGCTTGAAACCAATCAAGTTCTGCTGGAGCTGGCTAAGAAGGAGTTTTTGAGTATTGGAAATAAAACAAGGTATATACAGATAATTGTCATACAGCGGAAAGACGAAGACCAAGACATCGGTAGTTCAACAGGCGAGAAATACGCAGAGAAAAACATAAATAAAGACTACGAAACCAAAAAGGAAGGAGAAGCTTACATAACCGCAGAGTTTGATTACGGCAGAACAGAATTTACCATTGGTGATGAAAAGCACTATTCAAGATCTAAACACGGCTCAAGAAAGTATCTCAACGGCAAACTGGAACCGAAAACATATTACGCAGTGTTTCAGCGCTCTTTTGATGATTATGGATCTTACGACTCAGAGAAGTTTCTCTTTTTCAAAACCAAAACGTCCTCCCAGGTGGAGGAGTCCTCCCAGGTGTGGAAAATCGTTGTGCCTGTGGTGGTATCAGTGATTGTCGCTGCAGTTCTCATAGTAATCGCCATCTATTTCTACAAACCgccgaccgTGGCATCATATTTCATCAATTCTGGAGACGTTGTACCTAATCAACAAGCCGTGGGAAGTCTAAAAAGGAGAAACATATTTATTTTAATAAAAAAAAATCTTATTGATACACCAGGCCATGTGGATTTTAGCTATGAAGTATCCAAGTCTTTGGCTGCTTGCCAGGGTGTTATTCTACTTGTTGGCTCAGCACAGGGTGTTCAGGCTCAAACAGTGTCCAACTTTTTTCTTGCTTTTGATAATGATTTGCATATTATACGAGTACTCAACAAGGTTGACTTGAAGAGTGCTAATCCCGAAGGTGTATCAAACCAAATGGAAAAGCTGTTTGATGTTGGACATGATGATATTTTAAGAATCTCAGAAAAAGCAGGCTTTGGAGTTGAAAATATGCTAATGACCATTGGTGACCCTGTAGCACCATTGAAAGCCCTGCTGTTTGACTCGTGGTATGACCACTTCAGAGGTGTGATCTGTCTTGTGGCTATCCTGGATGGTTCACTAAAGAAAGGAGATGAAATAATGTCAGCTTACACTCAGCAGAAGTATGAAGTGTTGGATGTTGGAATTATGCATCCTGGGGAAGTCTCCACTGGTTCACTATTTGCTGGCCAAGTTGGTTTTGTAGTCTGTGGAATAAGAAACAGTAAAGATGCTCAGATTGGTGATACGTTCTTTCATCCTGATGCCCCTGTGGAGCCTCTGAAAGGATTTAAACCCATGAGACCCATGGTGTTTGCTGGCGTGTACCCTGTGGACCAATCAGAGCATCTCTTCTTAAGATCTGCTATTGAAAAGCTCACACTGAATGATGCCAGTGTTTCTGTTAACCCTGACAGCTGCCTTGCTCTGGGTCAAGGATGGCGGCTTGGTTTTCTTGGCTTACTGCATATGGATGTCTTCAAACAAAGACTGGAACAGGAATATGATGCGTCTATTATTATTACTTCTCCAAGGGTTCCTAACAAAGCAATTTTAAAAAAGGAAGAGATGGAAGTGGAAGTTCTGAATCCTATGGAGCTTCCAGATCCCTCTCGGGTTAACATGTACATGGAGCCCTATGTCCTGGGCACGATCGTTTTTCCTGAAGAGTGTATGGGAAAAATGTTAAGTCTCTGCGAGAGCAGGCGCGGTGAACAACAAGAAGTGCTGTACCTTGACGAATCACGTGTCATGCTAAAATACCTCTTACCGCTGAACAAAGTTATCGTGGACGTCTACGACGAACTCAAAACCCAATCATCTGGTTATGCGAGTTTCGATTACGAAGATGAAGGATACAGAGAAACAAACATCGTGCAGATGGATATTCTATTAAACGGCAAAGCAGTTGATGCGTTAAGCTGTATAGTTCACGCAGACAAGGCTGTACAGTCAGGACGAGCCATGTGCGCTGAACTGAAGGATGTTATTCCAAGGCAGCTGTTTGAAGTTGTGATTCAAGCTTCAGTTAGAGGAAAAATCACAGCAAGAGAGACTATTAAACCACTTAGAAATGACGTCACGGCAAAATGTTATGGCGGTGATGTCACACGAAAGATGAAACTGCTTCaaaggcaaaaagaaggaaaaaagaaaatgaaaaggataggaaaagTAGATATTCCTCACGAAGCATTCCTGACTGTAGTAAAGAGATGA

Transcript

PcrG009728.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF06421 all species →	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR038363 all species →	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006297 all species →	Family	Elongation factor 4	Interproscan
IPR013842 all species →	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR035654 all species →	Domain	Elongation factor 4, domain IV	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512 all species →	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0097177 all species →	Molecular Function	mitochondrial ribosome binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG009728.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.