Gene detail

Detailed information of PcrG010384.mRNA1 in Podabacia crustacea

Genomic Location: ptg000352l:1670924...1709683
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG010384.mRNA1

ATGAACCGGGTCAGATCAGCTTGTGTTAAGACAAACTCATCAAAGACGTGTTTTGTCAGTCTGTCTGGAGACCTTGCAGAAGCGATAGGGCTAAAGATTCAGGGCCAGCCTTTTGCTCTTCAACTTCAGTGGACAAATGGCAAAGCCTTCACTAGCTGGTCCGGTGAGGTCATACGTAGCAAGAAACACGATCCCTTAAGCGGTTCATTATCTGTTATACAACTTGGAAAAAAGTTTGCAGATTTACTGGGACTGGTCGAGGATCAACAGGTCTTAATTGAACCTGTTGTCAGTATCCCATCATGCAACAAAATAAGTGTGGATCCAGTAAGTGAAAATGATTGGGAAATATTGGAACTTCATGCTGGTTACATCGAGAGCCAGCTTTTAAACCAAGTGAGAGTTGTGTTTCCTAACCAGCTGTTACCAATTTGGATTCAAAACAACATGTGTGTGGTTGTCCAAATTGTTAGTCTTGAACCTATTGCCAGCTGTGTGAGGCTTGATGAGTTTACAGAAGTCATTGTATCACCAAAGATAAGACCTTTTTCTCAGCCAAAACAAGAGCAACAAGCTTTCACTACTACTGGTAAGAACATAACAACATTAGGAAACAGTGAAGGTAATGGTGGAGATACCAAGCAGGAACATGCCACAACAAGTACAGCCTTTGGTGATGATGATACTCAGCATTTGTCTGCGGCAAGTTCTTCTAGTGCAGACTTACAAGAACAAAATAGTGTTAGTAACAGTGGCCTCATGTCAAGATTTTCTGGTTATTTGCGTACATTGTTTTATACCCATGATGAGGAAAATTCTGCTATTGGAAATACGACTTCTGAATCTTCAACTCAGAAAGGAAGTTCTCCAAATGAAGAAAACTGGGCAACATTTCCTACTTCTACACTGAGTAATGGAGCACGCAATGAACATATTTTTGCTAAAAGTGATTTTGTTATGTGCTTACGAGTACAACCAGAGCCCAGAATAAATGCAAACAAGTCAAGTGAAACCAATTCATCTGCATTAAAAGATTACTATTCTCTGCAGCCTACATCAGTGTTTGTCGATTTTGAATCTTTGCCACCTTTGGTTCTGAAATCATGGACTTGTAATTTAACAACTTTTCCACCACCCGATGGCATTATTGTAAAAACTGTTCAAATTAGCAGATTGTTATCACCAAAAGAAAGGTCTGTATCCCGGACAAGTAGCACAGGGGCAACCAGCCGCGAAAACCCAGGATCCAAATCACAAGATTCTACAAACAGGGAATCAGAGTCTTCAGACAGAACTAGTCAAGATGCAACTAGTCAGTCATCATCTGATTCCACCTCTACTGATGTATCTCTGCCTCGCTGGATTGTAAGGATGGTGATGACAAGCAGTATAAACAGTAGTGTCAAACAGAAATCATGTGAAATGGGTGTGCCAGAGCATGTATTACCAGGCCATGTGGTTATGTCCAGAGATCTGTCTCAGCTGCTTGGTACAAAAGACTCATCTTTAGTTAAAATTCAGAATATCTCTCATGAGCCATCAGACATTAAAGGAATTATCTTACATGCCTATGGAGACACTGAACAGAAGCTTCAGGACATTTCTGTTGACACTGCACTAGAAGCTTTCCAGGGTTGGACCTGTTCTGTCTGTAGCAGAGAGGCACCTCTTGTACTTTGTAGTGGAGTGCTGTTGTCCTTTGATGTCCCACAAGGTCAAGCTCTTCAGTTTGTGGTCACAGTTCTAAGTCATCAACAGACCTCCAGTTCAACAGACAGACAGCCATATTATCACCTAACCCCTGAGACTCTTGACAATGTAACAGTTGTCATAGCAACACCTCGCAATGTGGTTGCAGGTTTTGATCAGGCCTTGAGTACTCAAGAAAGCAAGCCATGGCAGCCAAAGTACCGCATTACTAACTTGGGAGGTGTAACAGACACATTTCACAAGTGCCTGGATCACGTCTTATCTGCCCTAAGGCAGAGACCACTGGTAAATCATCTTGGAGGTGACATCATTACAGGGTTACGCAGTGGGGCTCTGTTAATCTGTGGTAGTGGTACAGGGGCTGGGATTGGTTGCGGCAAGACATCTCTTGCTCATGCAGTGTGCCATCAACTTCAGCAATGGCCTGTATGTGCACATGTGACTCTTGTGGATTGCATTCCATTCAGAGGAAAAAGAGTTGATACCATTCAAAAGCAATGGCAACAGATATTTGTTGAAGCATCGTGGCATCAACCATCCATAGTCCTGTTTGACGATTTGGATCAAGTTGTTTCAGCTCCAAGCGCTCTTCAAGAAATGGGCGGGGAAGCTTTGTACAAACGCCGACTAGCGCAGGCATTCAAAGATCTTATTACAACAGAGATTGACAACAATAGCAAAGTAGTTGTCGTAGCAACAAGCAAGTCTCGTGACTCATTGCACCCTTCATTACTGACATCAAGAGGCTGTCACATCTTTCAATGCTGCGTGGAGCTCCACCTCCCTGACAGCAATCAAAGGAAACAGATTTTGTGCGCAATGTTAAATAAGAGGCTTCCTTTGCAAGACCATGAGGGGTTAGAACTCAGGTAA

Transcript

PcrG010384.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09262 all species →	PEX-1N	Peroxisome biogenesis factor 1, N-terminal	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR015342 all species →	Domain	Peroxisomal ATPase PEX1, N-terminal C-lobe	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG010384.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.