Detailed information of PcrG010413.mRNA1 in Podabacia crustacea

Genomic Location: ptg000352l:3178071...3244511
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057
all species →
Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00058
all species →
Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF15902
all species →
Sortilin-Vps10Sortilin, neurotensin receptor 3,RepeatInterproscan
PF15901
all species →
Sortilin_CSortilin, neurotensin receptor 3, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172
all species →
RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR023415
all species →
Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR036055
all species →
Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR000033
all species →
RepeatLDLR class B repeatInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR011042
all species →
Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR050310
all species →
FamilyVPS10-related sortilin family receptorsInterproscan
IPR006581
all species →
DomainVPS10Interproscan
IPR031778
all species →
DomainSortilin, N-terminalInterproscan
IPR031777
all species →
DomainSortilin, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12106
all species →
SORTILIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005794
all species →
Cellular ComponentGolgi apparatusInterproscan
GO:0006892
all species →
Biological Processpost-Golgi vesicle-mediated transportInterproscan
GO:0016021
all species →
Cellular ComponentmembraneInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24498SORL1; sortilin-related receptor-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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