Gene detail

Detailed information of PcrG010475.mRNA1 in Podabacia crustacea

Genomic Location: ptg000359l:560524...574670
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG010475.mRNA1

CTGACATGTTTGTTTATCAGTTTGTTCGTTGGTCGTGGTTTTCTCGAAGATCATGCCCTCTAAAAGCTGAATTATGATTGTAGTCGGTTAGAAAAGGGCTTCGAGCTCTTGGCTAGGTAGAAAGTTATTGTCCTTTCGCGAGCTGAAATCGAAGAGTCTTTTGTCCAGTTTGGAAGAGGAGTATTAAATTCACCTCTGCGCAAGGGTGCAACTTTGAATAGGATGGATACGGACGCCAGTTGTTTTCCCTTGAAAGACATCTCGTCGGTGGTCGAAGTTTTCAAGTTGGAACTTGCAAAAGCAGAGCCTAACCTGGCGAAATTATCCATCATTTTGGGGTTCTTCGAGACGGCGCTAACTTGCAAAGGATCATCAAATAGCTGTCCCAGCCTCGATAAAGAAACCTACGACGCGCTTGGCGGCAAATTCCAGGCTCTGATTCAGAAAGATTTGAACGTGAACACAGAGCAAAAGCCAGCAACAAGGGAGTTTATTGTGGATGTCGCAGATCTGGTGTGGAGCTGTCTTTCGAAGTCTTACTTCAAGGATAAACCTCACATTCAAAATCTGTACAGTTTCCTAACAGGAAATCGACTAGACTGCTTTGGTGTCGCCTTTACTGTGGTGGCAATTTGTCAAGCACTAGGCTATAATGACGTTCACCTAGCACTGTCTGAAGACCACGCCTGGGTGGTGTTTGGTCAGAACGGTACAGAGACGGCAGAGGTTACCTGGCATGGCAAGGGTAATGAGGATAAAAGAGGCCGACCAGTTGACTTTGACGAGACCACTGCACAGAGCTGGCTATATCTCAGTGGTTACCCCGTGAAATGCACAAGGCATATGGAAGTCGCATCTATGGTGTCGTCCATAAATCCAACCATTAGTAACACTAGCGACAGTGTGGAATTGGCTAGTTTGCAACAGCAACTTCTGTGGTTACTGTATGATCAAGGTCATCTTAAAAGGTATCCCTTGGCCTTGGGAAATCTTGGCGACTTGCAAGAAATATCGCACACTCCTGAACGTCCATCTGCAGAGGACATCCTCAAAGAAGGCATAAGAGTGAACCAAACTATATACAAAGATCAGCACGTCTATCCATACACCTACCTTGGTGGATATTACTATCGGCAGAAGCAGTACATGAAAGCTATTGAGTGCTGGGTGAAGGCTGCATATGTTGCTGGAAAGTACAACTATTCCAAAGGAGATGAGGAGATATTTAAAGAATTATACGAAATAGCTAATGACTTTATCCCAAACATTCTGAAAACATCGTCTTCAGCTTCCATCAATACTGAGAACAATGCAGCTGCCAGAAACCCCAACCTCACAGCAGACCCAAGCTTTTTTGCATTTGTTCTTCAGTTTTACGATGGTGTTTGCTTGTGGGAGGAAGGCAGTCATACTCCTGTGTTGCATGCCGACTGGGCCAAGAAGCTTGTACAGTCAATTTCGAGATTCTCTCCAAGTTGTAGGTCTGCTCTGTCATCTTCACAAGCAGGTACACTTGCACCAAAGCCAGGGCCCGTAAAAAATGACTTGCCTGAAACAAAGACACTTGTTAGTGATGGTGCCAATGATAATGTGGAAAAGAGCAATTCAGCATCAACTAGTGTAGAAAACTCTAAAGAACAAGTGGCACTAAATCTTAGAAGTGAAAAAATGAGAGGGATGAGAGATTTACTGACAACAAGTGGCAAGATAAACACCAGCGCAATCAAGCTCCAGCTAACAGCACAATCCCAAGTGAGTGTCCCAAAGAGTAGAAGAAGATCATCGTTTAAAACTGACGACTATGTTTATGACTTTGGGGAGGAAGCTGAGGGTgaagaagaagaggatgaagaagaagaagaGAGGAGGCCCAAGAAAGCCATGAAACCAGATTGGGACTATGTAGCTTATTAATTAATAATATTGCATTACATACAATCATGTAGCTTATTTACATTCTTAGTATATCAACTAGCTGGGTCTTtactatcaaaatcatgtgcagtggtaaaatgcatgtgctaaatttcgtctagtgctgtgtcaatcgtgaatcaaaaactttcatcacgtggacaccatttgctcagcgaaaaagcaaacacaaagcttcatgattttgggatactctgctacaaaacatcatgcaatcctttaaaattaaacaaaactgcttttctttaaggctgaatacttcttatgaggtttccaaggttccctgttggcttgatagtgtcattattgttcatactgaaaaagcaatgtttgcatgaccatcgagtgaccaataaaAATCACATCAACACTGAAGATGCTCACAAACTCAAACTGGCCCTAAAAAGAACTAAAACCAGGTTTTCATTAAGAGCAAGTTTTTATCGTTGTTGATGTTTTCTGCCGTTTTGTCAACGTTACTAGAATGAGAGAGAAAGTTACTATTAACCTTATTTGGCATTTGTCTTCTAAATAAGGTTGTGAGGTGTCTTTCCAACCAGTCAATGGAATTTGCCTTTCAACTGCAGTTTTGCACAAAATTGGTGCCAAAAAATTATTTCAGCAAGGAAACTAAAGTGTATTTTATCAACTTGTGAATCTGTATGCCTTGACATTTTTTACCCCACCGTGACACAGTGAAATTTCCCTAAAAACCACAAGTCTCATGGCAAAACCGTAAGACTTAAGAGGTATGAAAAACAAAAAAAATTAAATTTCGTACTCATTATTCAGCTTATAGTATATTAAACAAGTCAAGCCTGCCAGGAGCAGACTGTCATAATAATTATCATTACTCAATtaggggtggtgaatggtctcttaaaaaataaaggtctcgcagatttttagtcaaacttcggtctcagtcttgttttttgtagcaaagctgaacaccttgtagtctttaattttttgaaaagtcattttggggtctaaatcttggtcttccaatccaaagtcctaaaaaagtcttggtctctcagagaaaaaggctggtcttgccatcttgtcttgcatttaccattcaccaccactTCAATAGAAATCTTCACTCTTTCAGTAGGGGTTTTAGAATTAATAAGAAGCATATCATTTGCATTTAAATTAATGTTCCTGATTATTAGGCTTGTCTTATGACAGGAGGAGTTCCCCTtggccttacaggtagtgtgttggacttaagagcaagagatctgtgtctaactgcgagctggtatcactgagttgtgttcttgggtgggaaagtgtactAGGGTTACGACAGGTCAGGCAGCAGCAAAGGAAAAGGTTACGGAAAAGTTGGATTATTTTATTCTGACTGAATTAGGAAAAATTGATAAGGATGGAAAAGATATTGATAGATTTAAACACAATacagttgaacctcgattatccagacatcaattatctggactatttatctgtgggtggcgcggtggcctaatggttagtgcgctggactccagaccgaacggtccgggttcacgcctcggccagggcactgcgttgtgttcttaggcaagacactttacactcacagtgcctctcttcacccaggtatataaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05053 all species →	Menin	Menin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007747 all species →	Family	Menin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12693 all species →	MENIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000403 all species →	Molecular Function	Y-form DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan
GO:0045786 all species →	Biological Process	negative regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14970	MEN1, MNN1; menin	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.