Gene detail

Detailed information of PcrG010565.mRNA1 in Podabacia crustacea

Genomic Location: ptg000361l:3171984...3191300
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG010565.mRNA1

ATGCTGGCACCTTATTGGAGTTTGACTGATACGCAGGATTCTCTCGAAAAAGATGGCGTATCTAAGGTCTACTATCATATATATTCAGATTCCGAGCCAAGTTCATTTTCTATGTTGAATACGGCCACATCAGATGTTAAAACGTTCTATTCACAACCTTTGCCGACCGAGTTTAAAGCATCTTGGATGCTGGTGACAACATGGGTAAACTTGCGACCCTATCAGTACCCAGCAAACATGGCGCAAATGGGAAACACATTTCAATTGGTCTTGATCACCGACGGTGTCTATGCCTTTGTGATGTATAATTACCCCGCAAATGGTTTGCAGTGGTCGGCTCCCACACAAAGAACGTACTACAAATATTACCACAACTCTCGTGGTTTACCTGTGGTTGGCTGGAATGCTGGAGACAAGCAAGGAAACAAATTTAATATGCAAAGACAACATCGATGGGATAAAGGGCAACACCGACATCATTGGAAAACCGACATCATTGGGAAACCCAGCGCGAGACAGGAGTGTATAAAATGGTTCAAAGTGCAACCAGATCCTCGTTTCTACACTGAATACCTTGAGCCTTGTCCATGTAGCTTTAGACAAGCTTGGTGGGATGAGCGGTTCACCGTAAACTGGAGAGACTGGCCAAGACTGTGTGGCTACGCTCAGTTTCCTTCAATAGACGGGTGGGGTCAGGAATGTTGTTATTCTTCCGACTGGGACAGCTGGGGTGCACTGCTCGTAGGAAATCCTGGAGGAGGGTCTGCGCATAGATATCACAAGCTACCGCAAAAGTGGAGGGCCAAACACGATTCAAGCGATGTACTGGGTTATCAAAAGTGTTGCGTTAAAACAGACTTGTGTGATTTATATTACAAAGGACGTCCCTCTGATGACTGTGGAAATTATGTGGTGCTAGAATGGAGTTGGTTTTGGGGTGACCCCCATTTTGTCACTCTTGATGGCAAAAACTACACCTTTAACGGTCTTGGCGAATATGTCATAGCAGAGGCTCGGGATGGGAGTTTTAAGTTTCAGGCTCGTACGAAACTAGCAAAAGGTGATGGAACAGCAACGGTGTTTTCTGCTGCAGCTGCGAAGGAAAACAATACAAGTGTAGTTCAGGTGGATTTGGAAGATGGAGGGGATGTGGACAATAAAACTACACTTTTCACATATAAACCAGGGGAAGACGTAGAGTCATTTGCAAATGCGTCTTTTGTTCCCATGTTTGTCGAAGATCTGAAATTCGCAAACGATTCATTACGTCAACAAGCAGAGGAGGCATGTCAAGGAGATATAAACTGTCTCTTCGACTCAGCCTCAACGAAGGATGTGACCCTAGGAGAAGGCACTAAGGCTGTATCTGTCACTCTGGAAAAGGAATCGTCTTCTCTAAAGGACTACCCTCCACGGATCGTCACAGAACTTTCACAAATCAATGTGACCGTCAATCAGAGTGTTAGCGTTACTGTGGTTGCAGAGGATCCGAATAACGACAATCTGAGTTTTTCCGTCGTCGGTGTTCTGCCGTCTGTTGCTGTTTTGCAAAACACGTCTACCTCTGTGACAATATCGTGGAATGGTAATACGGAGCAGATTCAGCTAGAATTTGTGGTAAAAGACAGTGAGGGAGGAACATCTTTTTTGAGGCCAATAATAAACCTGTGTGCTTGTCATAACAACGGCCTGTGCTACCATTCCGCCAGCCACAGAAATTCGACTCAAAGCAGTAACAAGATGAACATACTCCAGTGTGAATGTATAAATGGTTATACAGGGGAATTTTGTGAAGGTGATCGTGATGCGTGCGAAGCAAATCTTAATCCTTGCTACCCTGGGGTGTTGTGTGTGGATCTTCCCCCTCCGGCAAACATAACCGGTTATAAATGTAGACCTTGCCCAGGCGGTTTCACTGGAGATGGATCCAAATGTCAAGACTTCGATGAGTGTTCAGACAGTGATTCGAATGGATGTAAACAAATCTGTATAAACACACCAGGTTCATTTACATGTGACTGTTACAAAGGATATCGACTCAATATCGACCAACGCACTTGCGATGATGTAAACGAGTGCTTCCCTGTAAGTGACTGTATGCATAAGTGCAAAAACTACGAAGGTGGATACAACTGCAGTTGTAACGAATTTTTTAAGGTGGATCCTGCAAATACCAAGAATTGCATAGCGGACTCGCCATGTCAGAAGGGTAAACATGACTGCCAACACATCTGCTTTCTCAATTCAAACAATATTCAACTGTGTGCATGTAGACGTGGACATCTCGCGAATGATGGGAAAACATGTAAAGATATTGACGAATGTGCAACGGATGAGAACAGGTGTAACCAGAAATGCCACAACACAAAAGGAGGCTATTCATGTTCATGTGTGGACGGCTTTAGACTAGACACTGACAACGTCACATGCATAGACATCGATGAGTGCTTGGAATGGACGTTTAAATGTCCAGATCCTTCACATCGCTGCGTGAACACTCAAGGATCTTACAAATGCAAATGCGACGATGGACTCTATTGGATTAATAACACATGTAAAGGTCTCGATAAAGATGAAAAATCACCACCCTCATCACCAGCGCCGACACCAAGAAAGCCCTCTATCGAGGAGAAACTTCAAGCTGTCATCATCACATTGGAAGGGCTTAGCGTTGCTCAGGACACCTATACCCCTATTATATTATTTCAAACTCAAAAGTTCTTTCGTTTGGTTTTCAGGAGAGCGCTAGGCTACATCTTGTTTACATCTCATCAAGTTCACCTCCTTCCTGGATTCCCAGAACACGGCGTTCATCCCCTGGAAATTCGTGTGGCGTTTTATGTCCAGCTTCCTCCAGGAGTGGCTCATGACTCCGGCTCCACAGTAAACAGAAACGTCCTGCTTACTGTTATCAAGGAATCTCGAGAAAAGTTGGAGAACACCCTGAACACCCTTAAAGTTGCCTTCGTCGACGCTTCCACAAAAAGCAGATCCACTGTGCTCCGTCGGCTCCTCTTGAGAAAACGTCAGAGATTTATTTCATCATCGGGGGAGCGGTGCTGCAGTTCAAGGTGCGTTTTGAAAGAAGGAGAGGTTGCTGACAACGATGATGATGCTGTAGAGTTGGAGAAAGTCGACAAGTGCTTCGGTGAACACTTTGAAGATGATCCAGGTTATACAAACGAGCATGCCATAAACAGTGATGATGATGGTTACTAG

Transcript

PcrG010565.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000206 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051495 all species →	Family	Epithelial Barrier and Cell Signaling Protein	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13802 all species →	MUCIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005176 all species →	Molecular Function	ErbB-2 class receptor binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010469 all species →	Biological Process	regulation of signaling receptor activity	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG010565.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.