Gene detail

Detailed information of PcrG010610.mRNA1 in Podabacia crustacea

Genomic Location: ptg000367l:147055...152719
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG010610.mRNA1

AACAGGAACTATGATCATTTCTTTTAGCGACCGTGGATAGGTTTCAACGAGAAAGATTCTCGCGGATACTAAAATCGCCATGGTTGACAGCATTTACCGTACGCGTTCGTTGGGAATCGGTGTAAGTGGTATTCCAGATCAATATGCGGACGGCAAAGCAGCTAGAGTTTGGCAGCACTACATCGGCGGGCACAGGAAAAGAACGGAGTCCTACCGAGagtttttctgtaatctgttgagagaaaacgacgtgaaacatatCCTAGATGTCGCCTGTGGCACAGGGGTGGACTCTATCATGCTACTTGAAAATAAATTTAAGGTGACAAGCACAGATGCGAGTGATAAAATGTTAAAACAGGCATGGAAAATACGCTGGCAGCGTCGCAGGGAAGAAGCATTTGATGACTGGGTAATCGAAGAAGGCAACTGGCTGTCATTGCATGATGCCGCTATTGATGTTCCTGTACAAGGCTTTGATGCAGTCATCTGTCTCGGCAATTCATTTGCTCATTTGCCAGACTTCCAGGGAGATCTCTCCAATCAGAAGTTGGCAATTCAAAACTTTAAAGACATGTTGAAGCCTGGTGGAGTGCTGTTCATTGATCATCGTAATTATGATGCCATTCTCGATTCTGGCAAGGCCCCTCAGCGAAATATGTACTACAATAGTGACTGCATTGAAAGTATCAAGACTTCAGTACTATATGTGGATGGTAAAGAAAGTATGATAACACTGGACTATACAGTAGACCCATCCAAGGCTTCTGAAGATTTCACagaagaaggagaagaaccagcagcaaagaaaaggaagTCATCTGAAAGCTCAGAAATCAGCAAGTTCCGTCTGTCCTACTGTCCATTGCGTCTAAGCACGTTTAGTAACCTCCTCAAGGGCATCTTTGGTGAAGACTCGAGGCATGAAGTGTTTGGCGACTTTGAACCTCTTGGTCAGGTTGAGCTGCCTGCATACTATGTTCACATGGTATGGAAATCAACCAGTGACAATGTGAATGGTTTGGAAGAAGCATAAAGCATGAAAGTCTCATCCTCTCTGCCGATTACTACAGTAGCTTTAATTAGCTAAGACAGCTGTGTTACATGTAATTTACATGTATGTAAAGGTGTACAGTTCTGTTAAAATTTGCTTTCCTACAAACTGGAAACTGAAGTCAATTGACATTTATTGTATAAAAAAATTATTCCAATCATGAGACTAGAGGAGATTTTTGTGCAGTTTTTTTTTTAAGCAGTTTTTTGTTTTGTGTTCCAAGTcaatttagttagtataaggtttccctgagctcttgcccacagggcaagtgagcatgaaaaCAGCAGTCCTGAAAACTACAATGCCCTTTACAACCAGAGTCAGACAGTACATTCCCTTTTTTGAAGCAAAGTTCTAGCTGAGGGCCAGCTGTACCCGTTTGTTCCCCACATTTTTTGGAATCCCCACTTTGATATCTCAAAAAAAAAAAGAAAATGAAGACCCTAGAGAAGATACCTTTTGATCATAAAATTaatagaccttatgcataatgacataaaacaatgcttttgcagctcaaacctgcattgtggtagttatagtcatgcacaaatttaatatggcgtcatatttccccaaagcgggaatttcaaatggcagtaatgctgacatgtgttctgatgtggctgggctgtcgagtagcagctggggcgatttgcttgagcttttagataaatcatagatcccgtacttttactatttcccccactactaacactaccagctgccatcttggatttgggcttgactacagctaccatactgccttccgggcattatgtcgtcTATTAAGGTACAAAGGTACTTTTAAGGAAACATCAAAATAATAGGTTTGCAGTGTCCCACAATAATCAAAATAGCATTTCACTGCTCACAATAATTTTATGCCTTGGCGTTTCCTGCAGAGGAGGAACTTGTCCAGAGCCTTTGGAGTGACTTTCAGGTTTTTCTTATGCATTACACATGTATGTGTTGTTACAGACAGTAAAATTACTATGCATGCGTGCAACTAATTTTGAATCAAAATTTAAGACATCATATTTTTCTAGTGTCAGTGCTAAGGTAATCCATCTGAAATGTTTTATTGGTCAATATCATTTTGTTAATTTGATATTAATTTTTCTTTGCTATGCAAACTTGAAAACTTTTTTTAAAATTTTAATAGTTTGTATAAAGTGTAAAATATGGAATGGCCAAAAATGTAACCGCTATTTATACCAAGCTTGGTGTAATAAAAGTAAAAATGCTGCTTTAATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08242 all species →	Methyltransf_12	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014369 all species →	Family	Glycine/Sarcosine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR013217 all species →	Domain	Methyltransferase type 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16458 all species →	GLYCINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017174 all species →	Molecular Function	glycine N-methyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006111 all species →	Biological Process	regulation of gluconeogenesis	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0046498 all species →	Biological Process	S-adenosylhomocysteine metabolic process	Interproscan
GO:0046500 all species →	Biological Process	S-adenosylmethionine metabolic process	Interproscan
GO:0051289 all species →	Biological Process	protein homotetramerization	Interproscan
GO:1901052 all species →	Biological Process	sarcosine metabolic process	Interproscan
GO:1904047 all species →	Molecular Function	S-adenosyl-L-methionine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00552	GNMT; glycine N-methyltransferase	EC:2.1.1.20	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.