Gene detail

Detailed information of PcrG011379.mRNA1 in Podabacia crustacea

Genomic Location: ptg000398l:426807...449214
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF04558 all species →	tRNA_synt_1c_R1	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1	Family	Interproscan
PF04557 all species →	tRNA_synt_1c_R2	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR042559 all species →	Homologous_superfamily	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2	Interproscan
IPR007639 all species →	Domain	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR007638 all species →	Domain	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	Interproscan
IPR050132 all species →	Family	Glutamine/Glutamate--tRNA Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43097 all species →	GLUTAMINE-TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004819 all species →	Molecular Function	glutamine-tRNA ligase activity	Interproscan
GO:0006425 all species →	Biological Process	glutaminyl-tRNA aminoacylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG011379.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.