Gene detail

Detailed information of PcrG011436.mRNA1 in Podabacia crustacea

Genomic Location: ptg000402l:386359...449848
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG011436.mRNA1

ATGGCATTAACACTTAAAATCAACATTATTCAGAACAGCTCTGTCACGACTTTACAGTTCAACCCAGAAGCTACTGTAGCAGAAGCATTGAGAATTATAAGAGAAAGAGTTCCAGGTTCTAGTCCAGGAAAGATTTCAGATTATGGTTTATTTAGTCAAGATGATGATCCAGCTAAAGGAAAATGGTTAGAACCTGCCAGAACTCTGGATTTCTACCCACTGAAGTCCGGGGATATGCTTGATTACAAGTCTAAAGTTAGACCTCTAAAAATCAAATTCATGGATGGATCAGTAAAAACATCACAGATTGATGACAGTCACAGTGTTGGTCAAATTTTGGACTCTGTTTGTATGAAGATGGGAATCACAAATGTTGAAGAATTCTCACTGCTTGTTGAGGGTCAAAAGGAAGATAAAGAAGATGCAGATAAAATGGGAACAATAAAGAGGGATAAATCAGTGAAAGATGTATGCCTGAAAAAGATGGAAGAAAGAGACAAGAAAAAAATGGATCAGTTAAAAAAGAAACTCCACACGGATGATGAAGTTCACTGGCTTGGCCATGACAAAACTCTTCGAGAACAAGGAGTTGATGATACATGTACAGTTCTTTTGAGACGTAAGTACTTTTACTCAGATCAAAGTGGTGACATCAAGGACCCAGTCCAGCTTGGCCTGTTGTATGTTCAGTGTAGAGACGGTATCTTAGATGGAACCCATCCTTGTACACAGGAGGAGGCATCACAGCTTGGAGCTATTCAGATTCAAGTCCAGTTTGGTGATTTTGAGGAAGGCAAATACAAGTTCATAGACTTAAAGGAGTTTCTTCCTAAGGAATATGTCAAATCAAAGAATATCGACAAGAAAATAAAAGAGGAACACAAGAAAGCTTCCGGACATGACGAGTTACAGGCCAAGTATAAGTATGTGCAGTTGTGCCAAGGATTAAAGACGTATGGAGTGACTTTCTTTCTTGTAAAGGAAAAAATGAAAGGAAAGAATAAACTAGTTCACAGGCTCTTGGGTGTTACAAAAGAGAGCATTCTGAGAGTTGATGAGAAAACGAAGGAGGTGATGAAGACCTGGCCCCTGACTACTGTAAGACGCTGGGCAGCTTCACCAAACAGTTTTACACTGGATTTTGGGGATTACTTGGAGTCTTATTACTCAGTGCAAACAAATGAAGGAGAGAAAATATCACAGTTTATTGCAGGCTACATTGATATCATGCTGAAAAAGAGGAAAGGTCAAAAAGGTGACGATCCGGATTTTGACAAGGAATCTACAATGGTAGAAGATTCTGTGACTCCATCAAAGGATATGTACTTGGAACGCCAAACAGACAAGGTGGGGCATGCTGCGACTGGATCGGTGGCTTTGCCGGCTGTGATGAGAGCTGGAGGTCCAGGAGCATCTAGATACAGCATGGGTAAGATGGAACCAGCCCAGTATGGAACAGTTACAGGCTCTGCACACTCTGCTCGTAGGCCGCCCATGGGCTCACAAGCCAAACTTTACAGTCTTACTTCAGTACAGAAGGCATATATGAGCAGTCTAAGTCATGGACTGGACACTATTGTTTCTGCAGAACAGGATCTGGGATCTCCAGCGGAGATTCCTGCCCTTGGATCTGATCCAGCATCATTAAAGTGGAAACAGAACACTCTAGATCTTTCCAGACAAAATGTTGCATCACGTCTTGCTGCTCTATCAGCGTGTTGTGCTTCAATTGTCACGCTGACTTCAGGAGAGCCAGAGGAAACAAACTATACTGCTGCTGGGGCTGCTGTAAACACCATTTCCTCAAACTTACAAGACTTATCAAAGGGAATCAAAATGATTGCCGGTTTATTGGATGATGATGACAATGGTAAAAATCTTTTGGATGCCACACGTGGTCTAGCAGGTGCCTTTTCAAATCTTCTGAAGGCTGCTCAGGAAGGAGGGGGAGCAGACATCGAGTCCAGAGGCAGGTTGCTGTCAGCAGCTGGAAATGTGGGTTCATCTGGAGCAACATTGTTGCAGTACATGGGTGAGCCAGAGGTGGATCAACAAACACAAGAAATGCTGCTGGCGCTTGCTCAAGCTGTGGCTAATGCAACAGCATCTCTGGTGCTGAAAGCAAAGAATGTTGCCATCCAGTCTAATGACACTGGAGCTCAAAGCAAAGTGATTAATGCTGTAAAGGAAACAGCAAGAACCACAGCCCAGCTAGTGGCCTGTGTCAAGGTGGTTGTACCATCAGTTAGTAGCCACATGTGCCAAGAACAGGTTGTTGAAGCTGCAAAACTTGTTGCTACAGCTGTGGATGACACTGAAGGAGCTTTTAAAGAAGCGGCCCCTGAAGATTCTGACCTGTTGCGAGAGCTAATGACAGCAGCACAGGCTGTGCGAGATGCCATGAATAGCCTTCTGGTCAAAGTGCGAAATGGAGGCTGGCAGGCTCAGCAGGCAGGGAAGTATGATGCTGCATGTGATGACATTCTGGGTGCTACAGACAGACTCTTTAACAGCATGGGGAATGCGGGAGAGATGGTTAAACAGGCCAGGATCTTAGCTCAGGCATCATCGTCATTGGTCACAGGAATCAAAGCAGAAGCTGAAACTCAAGATGATTTAGATGCAGAGAAACGTCTTTTAGGTGCTGCCAAGGTGTTGGCTGATGCCACGTTAAAACTTGTGGAAGCAGCCAAGGAAGCAGCCAAAAACCCAAATGCTGCTGATCAACAGCAGAAGCTCAAGCAGGCTGCAGAGGATTTGAGATCAGCAACAAATGCCGCAGCCAGAGACGCTTTAAAAAAGAAATTGGTCAAAAGGCTTGAGGCGGCAGCTAAGGAAGCAGCTGGCCAGGCTACACAGCTGATTGCTGCAGCTCGCAGTGCAGGACCATCTAATCGGAATCAGGCATCGCAACAACAGCTGAGTGACCAATGCAAACCGGTAGAAGAACACATTAACCAACTTGTTGAAGCTCTCAGAGACACTGCAAGAAATCCTGACATTGCTGCTCCTCAGCTGGGATTAATAAATGCCTCAAAAGAGTTTATTCAGCCAACATCAAAGCTGGTTGCTAACTCTAAAGCTGCTCTTCCAACTATTGGAGATCCTATCACAGCTACACAGCTGGCAAACTTTGCTAAGTCAACTGCTTCCTCACTGGGAGACCTACGAGATGCTGCAGATAAG

Transcript

PcrG011436.mRNA1

CGAGATTTATCGGAAATCAGGTAACAGTCATATGTGGAATGGCCAGAACATATGAATATTCTTCAAAGTATTGCTGGTAGGCGGCGATTCAGGAAGTGGCAAAGCGAAATTGGTGTTGCATTGTTTTACCGAGGGCGGAAGTAGAATTCCGTACTGGCAATAGTTCATAGATAAGTGAGGATTCGAGAGATTTAAACATGGCATTAACACTTAAAATCAACATTATTCAGAACAGCTCTGTCACGACTTTACAGTTCAACCCAGAAGCTACTGTAGCAGAAGCATTGAGAATTATAAGAGAAAGAGTTCCAGGTTCTAGTCCAGGAAAGATTTCAGATTATGGTTTATTTAGTCAAGATGATGATCCAGCTAAAGGAAAATGGTTAGAACCTGCCAGAACTCTGGATTTCTACCCACTGAAGTCCGGGGATATGCTTGATTACAAGTCTAAAGTTAGACCTCTAAAAATCAAATTCATGGATGGATCAGTAAAAACATCACAGATTGATGACAGTCACAGTGTTGGTCAAATTTTGGACTCTGTTTGTATGAAGATGGGAATCACAAATGTTGAAGAATTCTCACTGCTTGTTGAGGGTCAAAAGGAAGATAAAGAAGATGCAGATAAAATGGGAACAATAAAGAGGGATAAATCAGTGAAAGATGTATGCCTGAAAAAGATGGAAGAAAGAGACAAGAAAAAAATGGATCAGTTAAAAAAGAAACTCCACACGGATGATGAAGTTCACTGGCTTGGCCATGACAAAACTCTTCGAGAACAAGGAGTTGATGATACATGTACAGTTCTTTTGAGACGTAAGTACTTTTACTCAGATCAAAGTGGTGACATCAAGGACCCAGTCCAGCTTGGCCTGTTGTATGTTCAGTGTAGAGACGGTATCTTAGATGGAACCCATCCTTGTACACAGGAGGAGGCATCACAGCTTGGAGCTATTCAGATTCAAGTCCAGTTTGGTGATTTTGAGGAAGGCAAATACAAGTTCATAGACTTAAAGGAGTTTCTTCCTAAGGAATATGTCAAATCAAAGAATATCGACAAGAAAATAAAAGAGGAACACAAGAAAGCTTCCGGACATGACGAGTTACAGGCCAAGTATAAGTATGTGCAGTTGTGCCAAGGATTAAAGACGTATGGAGTGACTTTCTTTCTTGTAAAGGAAAAAATGAAAGGAAAGAATAAACTAGTTCACAGGCTCTTGGGTGTTACAAAAGAGAGCATTCTGAGAGTTGATGAGAAAACGAAGGAGGTGATGAAGACCTGGCCCCTGACTACTGTAAGACGCTGGGCAGCTTCACCAAACAGTTTTACACTGGATTTTGGGGATTACTTGGAGTCTTATTACTCAGTGCAAACAAATGAAGGAGAGAAAATATCACAGTTTATTGCAGGCTACATTGATATCATGCTGAAAAAGAGGAAAGGTCAAAAAGGTGACGATCCGGATTTTGACAAGGAATCTACAATGGTAGAAGATTCTGTGACTCCATCAAAGGATATGTACTTGGAACGCCAAACAGACAAGGTGGGGCATGCTGCGACTGGATCGGTGGCTTTGCCGGCTGTGATGAGAGCTGGAGGTCCAGGAGCATCTAGATACAGCATGGGTAAGATGGAACCAGCCCAGTATGGAACAGTTACAGGCTCTGCACACTCTGCTCGTAGGCCGCCCATGGGCTCACAAGCCAAACTTTACAGTCTTACTTCAGTACAGAAGGCATATATGAGCAGTCTAAGTCATGGACTGGACACTATTGTTTCTGCAGAACAGGATCTGGGATCTCCAGCGGAGATTCCTGCCCTTGGATCTGATCCAGCATCATTAAAGTGGAAACAGAACACTCTAGATCTTTCCAGACAAAATGTTGCATCACGTCTTGCTGCTCTATCAGCGTGTTGTGCTTCAATTGTCACGCTGACTTCAGGAGAGCCAGAGGAAACAAACTATACTGCTGCTGGGGCTGCTGTAAACACCATTTCCTCAAACTTACAAGACTTATCAAAGGGAATCAAAATGATTGCCGGTTTATTGGATGATGATGACAATGGTAAAAATCTTTTGGATGCCACACGTGGTCTAGCAGGTGCCTTTTCAAATCTTCTGAAGGCTGCTCAGGAAGGAGGGGGAGCAGACATCGAGTCCAGAGGCAGGTTGCTGTCAGCAGCTGGAAATGTGGGTTCATCTGGAGCAACATTGTTGCAGTACATGGGTGAGCCAGAGGTGGATCAACAAACACAAGAAATGCTGCTGGCGCTTGCTCAAGCTGTGGCTAATGCAACAGCATCTCTGGTGCTGAAAGCAAAGAATGTTGCCATCCAGTCTAATGACACTGGAGCTCAAAGCAAAGTGATTAATGCTGTAAAGGAAACAGCAAGAACCACAGCCCAGCTAGTGGCCTGTGTCAAGGTGGTTGTACCATCAGTTAGTAGCCACATGTGCCAAGAACAGGTTGTTGAAGCTGCAAAACTTGTTGCTACAGCTGTGGATGACACTGAAGGAGCTTTTAAAGAAGCGGCCCCTGAAGATTCTGACCTGTTGCGAGAGCTAATGACAGCAGCACAGGCTGTGCGAGATGCCATGAATAGCCTTCTGGTCAAAGTGCGAAATGGAGGCTGGCAGGCTCAGCAGGCAGGGAAGTATGATGCTGCATGTGATGACATTCTGGGTGCTACAGACAGACTCTTTAACAGCATGGGGAATGCGGGAGAGATGGTTAAACAGGCCAGGATCTTAGCTCAGGCATCATCGTCATTGGTCACAGGAATCAAAGCAGAAGCTGAAACTCAAGATGATTTAGATGCAGAGAAACGTCTTTTAGGTGCTGCCAAGGTGTTGGCTGATGCCACGTTAAAACTTGTGGAAGCAGCCAAGGAAGCAGCCAAAAACCCAAATGCTGCTGATCAACAGCAGAAGCTCAAGCAGGCTGCAGAGGATTTGAGATCAGCAACAAATGCCGCAGCCAGAGACGCTTTAAAAAAGAAATTGGTCAAAAGGCTTGAGGCGGCAGCTAAGGAAGCAGCTGGCCAGGCTACACAGCTGATTGCTGCAGCTCGCAGTGCAGGACCATCTAATCGGAATCAGGCATCGCAACAACAGCTGAGTGACCAATGCAAACCGGTAGAAGAACACATTAACCAACTTGTTGAAGCTCTCAGAGACACTGCAAGAAATCCTGACATTGCTGCTCCTCAGCTGGGATTAATAAATGCCTCAAAAGAGTTTATTCAGCCAACATCAAAGCTGGTTGCTAACTCTAAAGCTGCTCTTCCAACTATTGGAGATCCTATCACAGCTACACAGCTGGCAAACTTTGCTAAGTCAACTGCTTCCTCACTGGGAGACCTACGAGATGCTGCAGATAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21692 all species →	Talin_R4	Talin, R4 domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09141 all species →	Talin_middle	Talin, middle domain	Domain	Interproscan
PF16511 all species →	FERM_f0	N-terminal or F0 domain of Talin-head FERM	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR049108 all species →	Domain	Talin, R4 domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR015224 all species →	Domain	Talin, central	Interproscan
IPR032425 all species →	Domain	Talin, N-terminal F0 domain	Interproscan
IPR036476 all species →	Homologous_superfamily	Talin, central domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19981 all species →	TALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0001726 all species →	Cellular Component	ruffle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG011436.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.