Gene detail

Detailed information of PcrG011675.mRNA1 in Podabacia crustacea

Genomic Location: ptg000423l:469211...486486
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG011675.mRNA1

ATGTCCAAGAAAGGGAGTGAACCACGAAGCGTAAACGTTGCTGTTGTGGGTTTGTCTGGATTAGACCGAGATCAAGCTTTTTTTGGCGTTGGAAAGTCGTGTTTGTGTAATCGGTTTGTACGGCCGTTGGCCGACGAATACATTACTGAACACACTTCGGTGTTCAGTTCTTCAGACTTCGGCGGTCGAGTGTTGAATAACGATCAGTTCTTGTACTGGGGTCATTCGACGAAGACAGCAGACGATGGCAGCGAGTTTGTAATTCATGTGATAGAGCAGACCGAATTTATCGATGATGCGACCCTTATGCCTTTATCTCGAGGTGGGCAGCTTACACCGTATCCAAAGAGATGTGCGATCTCAAAGCTTTCCTCCCCAGAAAAGTTGATGTATATTAGTCGAGATCAAGTCGCTTTGCAGAGTGACTACGAGCAAGTAAATCTACCCGGGGGAAAAGTTACTATTGATGGTTTTCTCGTCGTTTATGATGCCGAAGCGACGCAGTCGAAACGACTTGAGGAGCAGCAAGAGCGATTGTTGTCATCTATACTGAGTTACGTGCAGAAAAGTAAAAAGCCTTTTGTCCTCGTAGCGACGAAATGCGACGATACACAGCTTAATTTACTGCAGGAGGTTCATCGTTTTGCACAGTCTAAAAAATTGAACGTTCCCATAATCGAAACTTCGGCTCACGAGAACGTAAATGTTGACCTTGCATTTGTAGTTTTGGCACAGCTCATTGAACGTGGAAGGGTTCGCTCTAAAGTGATCCCTTTTACAGAGGCACAGAGAACTCGACGAGAATTATTAGAAAAGGCTGTACAGGATTTTCAAAGACTAATAGATAGAACCGTGACCGACTTTCGTGTGATCTGGAAGAACACGAAAAAGTTGGTCGAAAATGAAAGGGAGTTTCAAACTCACCGCGACCTTTGCGGGCTCGAAGCGTGCAAGCGACTTTTCAATAAACACATTAGAAAACTGAGGAAGGAGTTTGAGGAGAGAAAGTTGAATGGCTACTTATCGAGGCTACCCAGCGCTTTGGACGAGCTTATGCCGAGCGCATCTTCGATGGATCTTTGCCACTGGAACTGGCAAAATTGTCAAAAGGCGCTCCGAAATCACAAAGAGTTCGATAAATGGATGATCGTTTTGCCCGAGGAAACGGCGTGGAATGAAAGCGACCATTTACTCAGCGATGATCCACGTGTTCCATTTGACATTCTCTCTCTCCCGCGGGCTGAGCAAGTATTTCAAAACCACGCGGAGAAGTTAAAAGCCGAGGAGAAACGCGCTCGAATGAAGAACGAGTTTAGAAAACTGTTGGAACTCACGCCGCAAATTCGACCGGGTACCACTTGGCTAGAAGCGGCTGTTCTCCTCGAAAACGAGGAGAGCTTTCAGTACTTGGACGATTCAGACAAAACAAAAATTTTTGACACTTATCGTCGAGACATAACCGAGAAGGCCAAAGCCGATTTTCAGGAGTTGTTATTTGAATCAGCGGGGTTGTTTTCAAAACTTGAACCCAATACGCGCCCCTCGATCTCGCACGAAGACATGAGGCTCATAAAAGAGGCGCTGAGCGAGGACGAGCGATACAAACAGCTCGATAAATTGGACAGTGATCGAGAAATTGGCCTGATTAATCACATTGCTCTGTTGTACAGTCCTACTAGATGCCTGAGCGGAGCAGAGAGATGTCGGGACCGGCTTATGCAGGAGATCGTGGCCACCACCGCATACAGGCCACAGTTCATGGACAGTAGCGAAACACTAGATAGTGATGACAGTCAGATCAATCTGCTGATTTTGGGAAGTGGAGGATTTGCTCAGGCAATGGAGAATGAAATTCGGACCCAGTGTTCCTATGGTGACCCAGACAGTCTGGAGTTTGCTCTTGATGGACGCATGTATGAACTGGAATATCAGATGGTGGATGGTGATATGGATCCACCAGAATATGCACTCGCTGGTGCTGACTTCAGCGGACAAGTTGGTTGCTTCTGTGTGTATGGCTCACTCAATTCTCTGGATTTTATTCGTGACTGTCTGGATGAAATGAACAACCGGTCCAAGTATGACAGCATTGATGATTCAAACCCCATGCAGCATCCTCCTCCAACATTTCTAATCCTTGCTCGGAATCCCAACAATGATGACATTATTCATCAAATGAGGAAAGATGGCCAAGAATTGGCTTCCAGATTCAATGCAACTTTCATTGACTTACCAGTGGCCAGATTTTCGCCAGGAAAGATGATTCATGAAACACAGGTTGTAGATGCAATGCGAGGATTGCTAGAAAACCTGAAGCAACAAGCCCGCACAAATATGTCCATGGAGGATTTGAAGGATAGTGAGCCAGATTTGAAGATTGTGCTGTGTGCAATGTGTGGTGATCCTTATCCAGTAGAGCTGATTCTTGGGCCGCTGCTCCACCATCAGAACTGTTGGCGAAGTTCCACCCGGCCAGACACCATCATCCTGGAGACATACCTTGGGTTCGATAAGAGACGAGTGCAGATTACTCTAACCTCATACCACAGAGCCTACAGTCTTAATTACCAAATGTACCATGGCTATATTTTGGTGTACTCAGCAATACGAAAGGCGTCGTTAGGAACCCTCAGTGGTTTCTCGGGGTTCATCCCCCAGGTTCCAATCCAAGTGCTGGCTGTGACAGGCAGTGCGTCGGGTGCCAGTGTTGTATTTCACAGTCATGTGGCGGCTTCGCTGCTCGCTGAAGGCACTAACCTGGCCAGTAAACTGTTTGGAAAGTTCCAGACCACTTCTTCACAGTTTCAGCATCAAGCCGGCGCGTTCACTGCATTTTTCAACCAAGTATGGGAGAAGAAGCGAGACAGCGAAGTGGCGTACGCGAAGTTCCAGGCCGAACAGCAGCTGCGTCTGTCACAGAAACAACATAACAACCAAATCAGATCGAGAAACGATCCTCTACCAGAACCTCCAAGCAAGAGGCAAGCGAGCAGCGAAGACGAATTCAACCGCAGACGAAGCCTCAGCGATCGACAGCAGCCTACCTCTCCGAAGACGGTCCATCGCATGTCCGAAGGGACTTTGGACGATGCGGAAATCAACCCGTATGCTGTGTTTAATTCTATCAAGAGGCCAGTGGACGCTGCCAAGAACAGCCAGTCAAGGGATTCCAGAGGCAGTGGCGAGCTCCAACCGTACGCCACCTCGACGCCGAATGCGCTGTTCTTAAGTCTCCAGCAGAGCGGGGGGTTACCCGGGGCTACACCTAACAGTGACAGTATGTGGCAGAAGAGGGACAGCAAGATTGAAGATCCTTACGCTCAGGTGGACCTGTCTCGGAAGCGCTCTTTTAGAAAGTCCAAAGATATCACCATGAACGACAGCGAGGTCAACCTGATCGAGAACACTCTCTACGCGAACAACAACCTGGTCCAGTCGCAAAAATCCGCCCGAGAGACCCCTCCTACGGCGCGCGAAGCCCCACCACCCCTCCCCAAGAGGAATTACGACTTGAGCGAGGACTTCCCTCCGGCCGGCTCAAGAACGGACACGCTTAGGAGCATTGACGATGAGGGCTATAACACGTTCAAGAATGATGACCGCAAAGAGGAGAACCCTTACGCCGCCGTGGCCGATCTGCAGCCCAGGCCTCCCTCAGTCTCGGTAGAAGATCCGTACTTTTTGCGAGTCAAGGAGAAGATTGACTTCTTCAACAACAAAGTGGTCAAGCCAAGACAGGACATCTGGGTGAAGATGGACGCCAGGCAAGAAGAGGTACACACATCCGTGCCTGATTTACAAAGGAACAGAAAGGGTTCGGATATGGAGGCACCGCTTGCTCAACAAGAGGATGTCAGCGACCCGGAGTATGCTCAAGTACAAGAAGCTTTGAAAAACAAATTAAAAGTGTCGGAAAAACCTCGGCCTATTGTTTACGCTGTGGCTGTGGTTGAAGAGCCCAGCGAGTCCGACAAGAAACCCAACAAACAGCATGCACGAGTCACATCTAAAGGATCCTTGAGGCTGGCACACTCCGCTGAAGATGTTAGTACACTGGAGAGGATTTCACGGAGAGACACGTTTGGTCGACCAGTAGCTGGAAGACGTGAGCAGCGAGGCTATAGCGCCACTTCCGATCAGGGCACTGGGGACGAGGCAACGCTGCCTCGAACTGAAGAACGCCCGGCTAAGAAGAAGAGCGGCATCAGGCGATCTCGGAGTACCACGCGTAACCAGTCCACCACGCCTAACGTACCCGCAGAGGTGCACAAGAAACAACTGTTTCCAAGAgggagatcagCCAAGAAGGAATCGAGGAAGGGTGGGACGATGTCTTCGAGTCAAGAGGACGAGTCTTCGTGGGGAAGCAGTATGGATACGAGGGCGAAACACAAAATACTTGTCAGGCCCACTCTGTTGGATCTTCCTAAAAGGCAATCAGATCCTGGCACAGAAGAGGAAACTGAAGATGACCCAGGTTCACCAGGGCAAAAACCAAGGAAATCGCCTTGGTCGTCGTCTAGAAAGAAGCCGTCCCGAGAGGAACGCGAAGCTCTCAAACAACGgaagaaagaagagaagaagtcgagggaagacgaaaaacgccagaaacgaatggagaagaaaaagCGCAAGGACAGAGAAAAATACGACAAATTTTTCGAAAGCAGGCAGAAAAAAGTCAACAATTTTACGTATTTTTCTCAGCCACTGGACTCGATTTGCGACCCTGGAACGTATGTGCCAGTGTTTATTGACAAATGCATCGAGTTTGTGGAAAATTCAGGAATGCAAGTTGAAGGAATTTACAGAATCAACGGCAATCAAGCGGACATTAGTCTCATTGAACAGAAAGTGGAAGAAAATCCCCATGTGGAGTTGGCCGAGCTGGGGGTTGGGGTCCATGCGGTAACAGGCGCTTTCAAGTCCTTCCTGAAGCTTCTTCCCGAGCCCGTAATTCCTGGCTCCTACCAGAGCGCTTTCCAGGATGCCATGATTCATGTTGATGCCAACAGCCGTTTAGCTCGACTCAAGCAGCTCCTACACGAGATACCACCACACAATCTTGCTGTCGTCAAAAGAATCATGTTTCATCTTAACCGTGTGACAGAGTATTCCAAGGACAATCTCATGGAATCAAGGAACCTGTCTCTGGTGTTATTCCCGACTATTATCCGACCGGATTTCATCCGTCTAGAGATGTCCACACAGATGTACTTTATTTTGTTTATTCAAACGTGTATAGAAAAATGTGACTACCTGTTTTCAACGGACGAAAATTGA

Transcript

PcrG011675.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16512 all species →	RhoGAP-FF1	p190-A and -B Rho GAPs FF domain	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF01846 all species →	FF	FF domain	Family	Interproscan
PF19518 all species →	RhoGAP_pG1_pG2	p190RhoGAP, pG1 and pG2 domains	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039007 all species →	Domain	Rho GTPase-activating protein, pG1 domain	Interproscan
IPR032835 all species →	Domain	Rho GTPase-activating protein, FF domain	Interproscan
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR002713 all species →	Domain	FF domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR051978 all species →	Family	Rho GTPase-activating domain-containing protein	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR045786 all species →	Domain	Rho GTPase-activating protein, pG1 and pG2 domain	Interproscan
IPR039006 all species →	Domain	Rho GTPase-activating protein, pG2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46005 all species →	RHO GTPASE-ACTIVATING PROTEIN 190	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0008361 all species →	Biological Process	regulation of cell size	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13709	ARHGAP5; Rho GTPase-activating protein 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.