Gene detail

Detailed information of PcrG011916.mRNA1 in Podabacia crustacea

Genomic Location: ptg000433l:384111...399679
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG011916.mRNA1

ATGGAGAGGGCTTACAGATTACATTTCTCAGCTTGGCTGCTCAGCTTTATGACAGCTGTTATCACAGTTACAAGTAGACAGCCTCCAATGATAACAAAGTTTTTACAAAAGGATTTGACAAACCCAGAAGATGTAACCTCTTCCTTTAAGCTCCCCTGCAAGGCATCAGGGACAAATTTGACCTGGAGTTGGAGACATAACGATAAAGAGATTACCAACTTTGATGGGATCCCATACTCTCTCAGTAATGATGGAACTTTGAATGGAAAATATTTAACTTCCGAACAAGATGGAACATATCAATGTTTTGTGAAGGATGTGACTACTGGAGTTGAAGTTTTTAGTAGAAAACTTAACGTTGCTGTAACAGTTGTTGGAGAGTTTCCCAAAAATCAAGAACACAGAGATGTAGTAAAAAAGGTTGACCTTGGGAAGCCTTTCCAGTTCGAGTGCCCTCAGCATTCACCAGGTTTTGGTGCAGTTTACAGCTGGGTGGGAAAACTAGAAGGCATCGCGTTCTCCAGAAAAAGACGCCGAGGGATTTCGCCTAAGGGTACACTGTATATCACACACGTGACCCAAGAGGACATTGATGAGATAGATGGGCTACAGGGAATTGAATGTCGAATGACTGCTGGGAATTCATATGACAATTCTGCATCTTTGAAACTCGAGAAGAACAACCCAGAACAATCAGACCCCAACACTCTATTCGCACCGTACTGGGCCAGTATTCCTGCAGGGGAAGAAATAGCTGTAGAAGGAAGAAGTAAAACTTTCTATTGTTTCGCTATGGGAAGGCCAGCACCTAACATAACGTGGAAGAAAAATGGACGACAGATTTTTCATGGGCAGAATTCTTTCAAGATACCTACTACCCATGGCTACCACGGAAGACGTCTGACTATTACCAATGTGAGCAAGACAAATCACCAAGACCTATACACTTGTGAGGCTGAAAATTCTCAGAATAAGGAGCAACCGTTAGTTCGAAGTATAAACCTGGTAGTTAAAGTTGCTCCAAGATGGACTGATGGCCTTCCACCAAGGAAAATTGATGTTGTTATCAGAAGAAATGAAACTATAGAATGTAAGGTGACGGCAGATCCTGAACCAACAATCACGTGGTACAAAAATGGCAAACCTCTACAGCCAAGAGATCACACGAAAGTGGATGGTAACAAATTACATCTAATAAATGTCAGTCTTACTGAAGATGGTGTTTACCAATGCTCTGCAGAAAATCAATACGGAATGATTGTATCTGCAACTTGGGTACACGTGAAAGCTTGGAAACCGTCCTTCGCTAATGGGACGATTGGTCCTTTCACTTTGTTACATGACAGTGAAGGAAGATTGCAGTGCAAAACGAGTGCACAACCTCCACCGACATTCCAGTGGTTTAGAAATGGTGTCTTAATCTCTGACAAGGTTAACAGTCGTTATTTGTTACAGCCAGATGGTACACTAGTGATAAGGAAGGTGGATAAAGATCAGGATTCGGTGAATTATACTTGCAAGGCTCAGAACATGTTGGGACAAGATTCTGCAACAGCCGTTCCAGTGATTCATGTCCGACCAAGTTTCATAACTAAACCCAGAAACCGTACAGTGACTGAGAAAGAACCGGTGTCATTCCATTGCAATGCCAGTGGTAACCCAGTCCCAAACATAACATGGGTCAAAGATGGCAAGACTGTGGGCACAACGAACACACTGAGATTCCAGACTACATCGAGGTACCAGTCTGGAAGATACTGGTGTTTGGCACAAAATGGACTAAATGTCACTATCAATGCTAGTGCTGATCTTAATGTGCAATTTCTACCAATTTTCACGAGACGACCAAGAGACCAGACTGTGAAGGAAGGTGAAGAAACTACGTTCTATTGCACTGCCACTGGGAACCCACTGCCGAAAATAACATGGTTTAAAGATGAGATGACTGTGGGAACGGGAGAGACATTCAAAGTTATTGGACACAAGAATAGCTCTGGAAAATATTGGTGTTCAGCGGACAATGGCTTGGGTTTAGCCATCAACGATAGTGCTCACCTTAACGTTCTGTTTCAACCTCAATTCATCACCAAACCAAGAGACCAGACAGTGCATGAGAATAAAACAGTGACATTCCACTGCTCTGCCACTGGAAACCCAACGCCAAAGATAACATGGACAAAAGATGGGAAGACTGTAGGTACAGGAAGCAAGCTCACTTTTGTCGCCTCGAGGAGTCACGCCGGACAATATTGGTGTTTAGCGGACAACGGTTTGAGTGCAGGCGTCAAAGCAAATGCGTATCTTCATGTGCTGTCGGTTCCTTTTCCTCCAACTGATGTTAAAATATCAGACTGTAGCGATTGGACTGCGAAACTATCCTGGATCCCAGATCCCTCTGACGATGCCTCCGTCACTCACTACCTGATTGAGCAGAAATCGGATGGGAACCCTGTGGTGTTCAGATTACTGCGCAATGTTACTAACCCCAATACAAGAAGCGTAGTTTTGAACCTGACTAGGGGGCCTGTGCTACGTTTTCACGTGAAGGCAGTGAACAGTATTGGAGCAAGTCGCCCAAGTTTAACAGTCGAGACCACTTGCGAGAGTAATAAGACTGAAACTGGTGCGCGGGTGGTGGAAGAAACTCCTATTTTCCACAAGGCTTGGTTTCTCACCCTGCTGATTCTTGTTTCTTATGCACTCCTGTTCGCATTGCTTGCTGTTCTTTACCGTAGATACAAGAGGAAAGGAGTTAAATATGAAGTTGCGAAACGCGAAAGAAAACGCCGCGCACCACACGAAGTATCTCAAACCGAGGAAGACATTAGTAAAGAAGAAAAGAACAGCTTAGTTGAGGACATTGGAAAGAAACCACCCGAGGAAAAGCAAAAGGCGAATCGCCGCTCAAGACCTGTCTCCAATTACAGCTTGTTCGAGGTACAATTCAAGGAAGATGGCTCCTTTACGGAGGAATATGGCGAAGGAGATGAAATGTTCCAAAATATCCAAGGAACGTTTGTTTGA

Transcript

PcrG011916.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000435 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR050958 all species →	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080 all species →	CONTACTIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046 all species →	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG011916.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.