Gene detail

Detailed information of PcrG012142.mRNA1 in Podabacia crustacea

Genomic Location: ptg000446l:347759...350048
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG012142.mRNA1

AAAATGGTGGACGGACGACGCTGGGTTAATCGAAAGACAAATCCTTGTATTGAGGAATCAGAGGCTTCCAGGAAATGTCTAGAGGATAACAGCTACGATAAGAGCAAATGTGGGTTTTATTTTGAGGCGTATAAAGAGTGTAAGAGAGCATGGAATAAAAGAAAGGCTGAACGAAGAAGACAAGGACTCCCTCCGGATGATCCATAAATGGAAAGAATTGAAAATGTAAACTGACCGGACTGAGAGCACTGAAGAAACGGCGATATAGATATCACACAGGAGTGAGGAAACAACGTTCTACTTTTATTTCGGACAAGTTCTACGTTTGCTGCATGCACGTGGCAGATATCAGTAGGACATCCCTGGAATCTCCTTGCTATCAAAGATGACGTAAGAATTCAAATATTGTGGCTGAAGACTTTTTTACAATATGGGACAATGAAGAGTGTGATAATTTTTACACAGAGAGTATTTTGTGGATTGTGTTTTTGTGGATATTTAGGATCATCATCTGCACCCATACTGAAGGGCAGGAGGAAGGGGTTTGGTACGAAAGCTGGGGATAGGCGGGACACTTTGCGGCTTTCCGTTTAAGTACTTCACCCCAGGACACTTGTGGATAGTCAAAAGAGTCACCATCCTCCAAGACGCAAAGACAACAAGAGCACTTTCTGTAAACTTTTGCCTGAAAATCTTGTCCTTCTGACCAGCTGCCCCTGGGTCTCCGAGAATGAAGAGTCCCCAAAAcaacctcgttcccagggcctactccgcttccaaaagtcaaattataaataactacttaataactgcgtgcaagggctttactgtaaaattatagactgagggatgaaatttttgttttatgggccgagcctgttggcgagatccataaagcaaaaatttcagcccaaaggctggaattttattgtacagtcaactcttgccttgctgacaccccgctattacagacactcactattacggatgaaattcagatccccatctatagatgtttgactcaaaatgactcccggcattacggattctcacaatttgtttattatatggcttcagatagtcaaagcacgcaaaatagagagaacttcatttgccatcacaatttggtcgggataataaaaattaggacaagaagtcatctccagaactcattgttaaagaagagatacgtgttttgttcaattgcttgcttttttaacggagtttcgctgaaaggcttttactaagttcactaggttttgtaaataaaaaccttggcgggaaaaatccgtaatgcctgtgggcaataattattattactgggaagttccggaccactacttatcgcagccatataataaaGTGTTATAAAGTCCACttggatagtcaaaagtctccactatgggtagataaCTGCCACCCTCCCTCCTGTGGCAGAATAATGATGGGTGCATTATTGCTTGGAGCGGCATTGGGGAACCTACAACTGTCTGTTTGTTCATCTTGGCCTGCCTCTTGTGTTTCATTTTCTGAGCTGCATTGTTTGCAATTTGCTCTTGTGCATTCAGAAGGACAGTTCTGAATAACTGGGAATTGAACAGTAAAACAAGTCCAAGGTGATTGTTTCTTGGCCCAACGTTGTCACATTATACTAACAGGAGAAAAACCAGTGTCTTTAACTGTGTTCCAATTTTAAGAACTTTTAGTGGTTTTAAGAAACAGCAGTACTGGTCAGAAATAAAAGTGTCCAATTACCCCTTTCAGACTTGACTTGTGCACACACATAATGGTATTTGTGTTCACAAAACATACCTgacttggcaatgctaaatacagctaccacgattccccacggacatgtctcagagaggggaTCTCCCATTCAAACCTGCCTCTTTTATATGGTGTTCTATCCACTCCACTTGCCACCAATAAAGTGATTAATACTTAAATTTATTTTGTTCTCTACCTGTCAATTGGGAAAATGATTGGGTATGATTTTTTAAAAGTACTTTTTAAGATAAAATGATACATTTTCTTTTTTTCTTATCCTTCCCAAGATACTTGTGAGGAAAACTTGTTTAAAAAATAGCACAAAAATAATTGATGCCATATTGTAACCAGAAGCACTTTATGCTGTGAACAAAGGCAAACAGTGTTATAAATGTCAGAAAAAAATTGTAGACCTTCAAAATGTAgtacagtaaaaacctgtgtgtaagaacctgcatttgtcccagttagcctaaacaagttcttattttatgaagaaaaatttgcattgttgctg

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013489 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06747 all species →	CHCH	CHCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009069 all species →	Homologous_superfamily	Cysteine alpha-hairpin motif superfamily	Interproscan
IPR010625 all species →	Domain	CHCH	Interproscan
IPR051040 all species →	Family	Cytochrome c oxidase-assembly factor COX23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46811 all species →	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033108 all species →	Biological Process	mitochondrial respiratory chain complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18185	COX23; cytochrome c oxidase assembly protein subunit 23	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.