Gene detail

Detailed information of PcrG012204.mRNA1 in Podabacia crustacea

Genomic Location: ptg000446l:1582573...1602980
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG012204.mRNA1

GCGTATGGGAGCGCTCGATATTCGTGAAGAAGGACACGCAGAAAATATAAATTGTTTAATAATGACATTCTCGAGGATAATTTGGAAGATTGCTTCTTAGTGGAGAAGTGGAGAAAACATATACAATGCTTAAAAGTAAGAACGGGCTTCTGAAGAGGAAGCGCGTTGGCTTCTTGGTCAGTCGGAGAAAAATGCGCAAGAGTATTTTCGACACGTTTATGCAGTTATGTGGAAAAACTGGAATCGATTTGGTCGAGGTTGACCTGGATAAGCCACTTGAAGAACAAGGTCCCTTTGACCTCATTGTACAAAAAATAACAGACTACATGGCAGCTGTTGCTGACGGAGATACGCAAGCTTTAAAAACATTAAAAGGACTGGAGATGTACATTAAAGATCATCCAGAAGTGATTGTCATCGATCCAATGGAATCTGTCCGCAAGTTATTTGACAGAACGACGAGTTACCAGATTATGAAGGAATGTGAAATCTTAGAGGAAGGAGTGAGAGTCTCTATTCCTAATTTTGTGCAAATTGACAAGCTTGACTACAAAGAAAACTTGAAGAAAATTGAGAATGCCGGTGTTTTATTCCCAATGATTTGTAAAACAGTCATTGGTCATGGGTCAGAGTTGTGCCATGAGATGGCACTGATATTTAACAAGGATGGCCTCAGGAATCTCACGCCCCCTTGTGTTGTTCAGCAGTTTGTCAATCATGATGCCTTGTTATTCAAGGTATTTGTAGCTGGAAATAAACATTATATTGTTGAGAGACCATCAATAAAGAATTTTTATAAGGCTGCTGCCAGAGATATGAAAACAATATTCTTTTCATCACATGATGTTTCTAAACCTGATTCTGGTTCGTATCTCAGTGAGCTGGATGAAGATGATGATAATGACAGTAGCATAACCTTAGATGAAAATCTTGTTTTAAAACTTGTAAGGAAGCTTCAGCCAAAACTGAATTTGACAATGTTTGGTATTGACATTGTTGTGGAGAAGGGAACAGGGCACCATGTTGTAATAGACATTAATTATTTTCCTGGTTATGAAGGTGCACCGACATTTCCGGTTGATTTCGCCAAGTATGTTCATGACTTACTTGACAACTCGCATACAAAGGAAAGGACCTCTGCGACTCCAATAGTTTTCAGCTGACAAAGGTGTTCCTCTTTAGCAAACCTTTGTTAGTGTCTATAAATGAACCAAGAGTACAAGAATTTTTAAGTGTAGCGTAAGTAAACAAATGTTACTCTCGTCATGTTCAATCCTTGCTTTGTTTTAAAGGAGCCATTAAATGATTAAATATTATAATTCTTTTAAATCATTTTTTGTGGTACAAATCTCTTAGAATAGATGaaaaaaaaaaaaacacgaaacaaaatataacaataaaCCAATAGTTGATAAGGATAGTTCATGATATAGCTCCTACTATATTTGTTTAAAAGTAAGAAACAGTCCAAGACAGTTTGCAGAACTCTGTAGAGTTAAATTGTCAGATGAGTATAGAATTTTTGGTTTATATAGACCTTGGACAATTTGAGTGAAAGAAGGATTGAACACGAGAAGAGAGCAGTATTTTTTTACTCAGGCTAAATAACGCAGTTAATACTAAAATCCATTTCAGACTAGTTTTCCACTATCATTCTAACAATTACTTAGATGTAAATTTGCTTTAAAATAAGCTCTGTAATAGACCTTTTCAGCACAATCATAGTAAGACTATGAAGCAAAAAGTGCCAAGTTAAAAATTGAAAGTAAAAACAACTCACTCTGACTTTTTGCAAAAAAAAGGGGGCACTCTCTCATTTCATTTTGTGTGATGAGACAATTACATTGCTCCAAAGTCTGAACTGATTTATTTCTATCTAGATTTTACTCAGTTTCACAGAAATGTATTTTTAGGTGGATTAAGTACCTATTCTTCAGTGATCACAAGCTAAAAGGTTTATCCCAGAGTTGTTCAGTTTCATGAGGTTTTCAAGTCATGCTCAGAACGAGATTTTTATTACACACTGTAAAACACAATCCTACCTGCAGATAGAGTTTTtttttttttcaactttaattttaactttattttaCATATAGTAATTTGTACAAAAACTAAATCCTCTTACATGTAAAATAAAAATCATGAAAATTGATGAATCCTTGAATCCACTTGATTAAAATGAAAATTCCCGTAACTGTGTCCATACGTCTTATACCATCCTAGTTGGGAGACTTTACTGCCTGTTTTGAGCAAATTTTCTTTTCTTGTGAGGCTTGTTTTCTTGTTGTGCTGAGACAATAAGTTATTTCAATCAGCAATGGGGAATCATCAATCAGACATTATTTTCACAAAATTTCAGTAAACTTGTAGAATGGATTTGTTATGACATTGATGCTTGCTATTGCAGTGGTACAGCATGCATCAATTATTGTAATACTGGTAcagtgaaatgctgaattttttaaaaacttcatgggaaatgaaaattggtttgagcaactggggagctagagacattgagggtaaaaatgtattgttttactaaagaagatgaatgactttttggttcaaattattgggagtttctaaaaatcataggtttgaaagacctggattccacTGTATTTCACATAATGATTTGTTGACAACAGTGGTTAAATTCATTCTGATATGGCCAACAGCCCCATTTAGCATTGACTGTCTAAATAATTGTTTGTAAGCACATGAATACTAGACATTTTTGCAGTAAAATCCAATGTTTTGAAAATGAAGCAATGTTGCAAAAATTACACAGTTTGCATGGGAATGTCAAGGATTTTTAATGTCAAACGTAGAAGGAAATAAACTTTTTATGTCCAGGATTTTGTTGTTCCATAAATTAACACTCTTTATCCCTGACTGGGAGAGAGCTTCCCCAACACCATAATTATGAAAATAAATGACTACCAGCATTTAGATACTGATTGCACCTGCAATTTTTGCGATATGCCTTACAAAGAATACATGCATGTCGGCTGGGATCTACTCTCCATCAAGTTTACATGTGCTACAAGACATTAAATTTTATGGTAAAGCTCTGCATTTAATTCAGTTTCCTTCTCTTGGGCTAGTAAAATGAATTAAGGTTTTTGTGCATCATAATAAAAGACTGGCATTTGGACTTCACCCTGAAGGGTAATAACAGTGTTTTTTAAATAACACTTGGGAAAACAGCAGTTGTATACTACAAAGAAAGGGCTTTGAATGtttggttgccatagtaacattgatgtcaataaacccactttttcaaagtttatttaatctctagtaaatgtgcaaagtagcttgcccgaccgacgaaaggcaataaagcattagccagttaaagttgggctcctgaaatatccagatcagccacgttaaGTCTTGGAACAATTTTTTTGAAGTTACTGACTTCTGATGTCAATAAGCCAATCCGTTGATTCTGGATCATTGTTCTTGAAAATAGTTTATGACTTATGTAGTTGCTAGCCTCATGTAATAAGCTGTATAACAGATATTTATTCGACATTTTATTGACCATTGTAACAGCAGTTATCGTGTGTTATCTACACTCCTATGTGGGACGTTAACCACAGAGGAGTTGGTCCTGGCCCTACCCCACCCCCAGCAAGTTCAAGTTTTGCATCCTATTTCTGTTACAAATGGTAGTTTCAGGGCTTACtcatcgcctactttgtctaga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17927 all species →	Ins134_P3_kin_N	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	Domain	Interproscan
PF05770 all species →	Ins134_P3_kin	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008656 all species →	Family	Inositol-tetrakisphosphate 1-kinase	Interproscan
IPR041429 all species →	Domain	Inositol-tetrakisphosphate 1-kinase, N-terminal	Interproscan
IPR040464 all species →	Domain	Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14217 all species →	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032957 all species →	Biological Process	inositol trisphosphate metabolic process	Interproscan
GO:0047325 all species →	Molecular Function	inositol-3,4,5,6-tetrakisphosphate 1-kinase activity	Interproscan
GO:0052725 all species →	Molecular Function	inositol-1,3,4-trisphosphate 6-kinase activity	Interproscan
GO:0052726 all species →	Molecular Function	inositol-1,3,4-trisphosphate 5-kinase activity	Interproscan
GO:0052746 all species →	Biological Process	obsolete inositol phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00913	ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase	EC:2.7.1.159 EC:2.7.1.134	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.