Genomic Location: ptg000451l:1903549...1905530
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families
| CDS |
| PcrG012494.mRNA1 |
| Transcript |
| PcrG012494.mRNA1 |
| Protein |
| PcrG012494.mRNA1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008051 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21485 all species → | IF5A-like_N | Translation initiation factor 5A-like, N-terminal | Domain | Interproscan |
| PF01287 all species → | eIF-5a | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR020189 all species → | Domain | Translation elongation factor, IF5A C-terminal | Interproscan |
| IPR001884 all species → | Family | Translation elongation factor IF5A-like | Interproscan |
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR019769 all species → | PTM | Translation elongation factor, IF5A, hypusine site | Interproscan |
| IPR048670 all species → | Domain | Translation initiation factor 5A-like, N-terminal | Interproscan |
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11673 all species → | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003746 all species → | Molecular Function | translation elongation factor activity | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
| GO:0045901 all species → | Biological Process | positive regulation of translational elongation | Interproscan |
| GO:0045905 all species → | Biological Process | positive regulation of translational termination | Interproscan |
| GO:0006414 all species → | Biological Process | translational elongation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03263 | EIF5A; translation initiation factor 5A | - | Translation factors | ko03012 | deepkoala |
Genes whose expression across the transcriptome samples of Podabacia crustacea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Podabacia crustacea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
