Gene detail

Detailed information of PcrG012809.mRNA1 in Podabacia crustacea

Genomic Location: ptg000464l:464212...470706
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG012809.mRNA1

TTGGACTCGCGCGCGTGATTGCGCGAAGCTTCGATTTGCCGCGAATTCTGATGCAACTCCCTGTAAAACCTTGCAACTTCTTCTCTTTCTCTAACATTTTGCTAAAAGAAAGTTATTTTAATCGCAGTAACTGACTTTCTGATTGCAATGAAACTGGGTCGGTCACAATACCTGGTTGAAAGAAACAACAAAAACCAAGATGGCCTCCAGAAATGATGTGGAGTTGCCCGTAGTAAACGACATCGTTGAAAAATGGAAAAGGGAACAAATTGAGCTAAAGAAAAAACTTGTGATCGAGGACTGCACTGACTGGGGAGAAGCAACTGACGATCCTTTAATTAACTTGAATCTGATTGGTGGAGTTGACATATCATTTCCCAAGGGAGATACAGATCACGCATGTGCTTGCTTGGTAGTGTTGACTTTCCCAGAACTTGAGGTTGTTTATGAGGATCTCACCATGGTACATCTAAGATCACCTTACATTCCAGAATTCTTGGCTTTCAGGGAAGTTGGGTTCCTTGTGGACTCAATTTCCAGGCTGGGAAAAGACAAACCAGAGCTACTTCCTCAGGTCATACTAGTTGATGGAAATGGAATGTTGCACCCAAGAGGTTTTGGGATTGCTTGTCACCTTGGAGTTCTGACAGATATTCCTACAATAGGTGTGGCCAAGACTCTTTTCCATGTGGATGGAATAGAACGAGACTCCAAACATGCTGACCAGATAAAAAACCTTCTAAAAACTAGTGGAGATAGTTTTCCTTTGGTGGGCTCTTCTGGTACAATCTGGGGCAAGGCATTGAGAAGTACCCAGCAAGCTTGCAACCCAATCTATGTATCAGTTGGCCATAAGATAGGACTGGAAACTACAGTGAGCCTGACACATGCCTGCTGCCAGTACAGAATACCAGAACCCATCAGACAAGCAGACATCAGATCTAGAGAGTATCTCAGACAGCATTATACTGAAGAACTGAAAAACTGTTCCTGCAGGATACAGAACAATGACAATAATACCTCAACAGCAGAAAAGGATGATGAAAGAAATGAAGAAAATCTTGTAGATGATACCTGCCAGACATTTAGTGATCTTAAACTCACTTAAAGAACAGTAATTTTGTCCTTTCATTTAACAACTGATGCCCACGCAGATACTTTTGCTTTTTAAAATAATAAAGTGCAATTATTATAACATTTTTCCTTGCTATATACATGTACTTTGCAAGCAGAGTCAGTTAAATCTCTAAAAAAAATCACAAAAAATGCCTTCCTTATTCCAAGATAATTTGATAAAAGCAGCTCAGGCATACTTTACTAGCAGGGTAATACTTTTCATGAACTGGATTAATCAGTGTTAGCATACCAGTtctttggaaagtattttaagtaatattttataataatattttgaatgtttcatcagggtttctgaacacgaacggaatttgatgaaactgatgaaagcacaagtccaaaggccaagtcagtgcttgtattgttttcaagtgtttagaaTGTGAAATCAAAAGTTTTATGAAAAGTTTTATTTATTAATTTGTATATAGTTTAAGCAAAATTATTATAAAGGTTACGTGGCTTTAGGATAATTATTATTTTTTAAGTGATAAATAACAAAGTTATGCAAAAATGTAatacagtggaaccccggtctacgtacaccctcttaatacggacaccccgatattatggacagttttgtttgtccctacaaaaacgtcatacatttctttaaaaaataacccgcttattacggacacccgttaataaggacgacggacactttcccgtgtcctgagtgacaaactcttatagatcgtcaacactgctttacggacactgttaacatgcatatggacactgtttatagtcattgacaagattcctgttccggctaccattttcgagctggcgtcggccaacttgtttccgcgtttttgcatgctctaaaatattcaagtttgtctggacaaatgcaatgacagatactggaggacatgactgaatatctcaccagtgaaagactaacagaaacagcgaatagcctttcaaaggtttggtctaaaattcagtacacatcgttgagtcgtagactaaaggcgtcagtttaaagcaaagtcacggactttttcacaagagtctgttgcatgtcgattttcaagaacagttaagtaacttaacttaattgatgccctgagttacagataagcctggttcacactagagacataacaacataatgaagagatcagttttttgacgttatgcttatgtcattatgttccaactgtcgttatgttgtgttgtctacgctgaagacaaaacattattgtgagttttttctttctttccatttgcgtgaccttcccgttatatcgttatttcgctagtatgaattaggccttacggttacaactacagaagaaacttgttagggtacaagtaaaatgttttattaccgtaaaaaatgcctaccatggtctttttattgataaaaaaatgtgtccgtgagtttttacctgggaacccgcttaatacggacacctgataatacagacatttcggcgtgtccccttggtgtctgtattaacggggttccactgtatcAGGAAAGAAAGAGAGAAAATGTTAATTTTTATCACTGATGTTTAGAATAAAAATCTACTGATCTACACCTGTTTTACTGTAAGTAAACAAGATATAAAGATTAACCATGTGCAAGCATTATATCTGccatctttcaacatgctaagcaaacaagaaggatcaaagtccaccaatcagagcccactgacatgaccttttgaacttgtggcacatttacatagaagtgacatgaaaaaacactggcaagtatcagttgtgatttgctcatttcaaacagcacatcaaaagatgatgttgaaaggtgaatgctgaatgatgtcaaaggaaagaaactttgcacctaacactgaaagagggtgcaaggttcgtcgtcttttaggcttttgaaattccataacttgccatgaccttttccatgacttttcaaagttttccaggacctaactttgatcattttgatagaaaatttctatgactttccaggttttccatgacctgtacgagccctggggtgtaaATTAGCTTACTGCCTTACTACATcagggctttcaataagcaccaatgaatgatgaaaagcattggctgcattgctcagagaagagggctcctttttacccaCTAGACTGTgccatctcccttttttcagtctccgtttagtgttgtccgacccaccaggattttcacatcttcgaaaaaaaaaaagctgacgaggaaggtgataacccagtcaaccattttttttttactttaaatctgaaataCCGGTATAGGCAAATAaaatgtgtttctctctcccacaggagaggctttccatccaaagatgtcgcttaaatgattacattgggaatcagtagagtaacaactgtattgtagctagagcgtctgcaatctcgctgagctgttgcatttgtagttctgagggcttgacagcagcaaatatatgcacttccatttcttgtctcactgtttccattctctatgaatattatgctagggatatggagcctccttgttccacacttatcctaactttttttttttttacctttcttttttcttttctgaacgactgacccaaaatctgaaaacctatttgatgataaacaaagaaaaaaagagATGGCCTAAACTGAAAGAAAAGTTTTGTCAAAACACTTGCCCACTTAAAATTTTATTGAAACCTCGGCTACATTCTCTCACAAATTATTGTTTGTTGGGCgaacaaaacctggcatgaaaatgacctggaatgaacatgaaaatTATTACTTAGATTGGAGAGAAATCTGGGTAATAATCTTGGTCATAAATACCTCGgatcaatgtatgtttctgggaaactgccgacctacccctctccaaacctaacattaacactaacttttctctttgggcaaaatgttaggtttggggaggggtaggtgggcagattcccagaaacataccttgatCCAatacctcctactaaccgaggttcgagggcagtactgtaaattacggaccctt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004449 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04493 all species →	Endonuclease_5	Endonuclease V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007581 all species →	Family	Endonuclease V	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28511 all species →	ENDONUCLEASE V	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21813	ENDOV; endonuclease V	EC:3.1.26.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.