Gene detail

Detailed information of PcrG012992.mRNA1 in Podabacia crustacea

Genomic Location: ptg000483l:442495...453001
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG012992.mRNA1

ATGCCCGAGAAAGAAGCCTCATTACCGCTAGAATTATGGCGGGTCATTCTGACTCATCTTTCTGTCCGGGATTTGTGTCGTTGTTCTCAAGTTTGTCAGGAATGGAGAGAGCTTGTAAAAAGTCTAGATTCCACCCGATGGAAACAGCTTTTCTTGTCATCGAAGCGTTGGAAACACCCAAACTGGCCAAATTATACTCAGAAAGAGCCTTCTTCGTGGAAAGATACATATAAAGTCCATCATATGGCTTCAAAACAATGGGTGAATCGAAGTGTTGAGGTTAAATGCGCGCCTTGCTTGTATTTGTTTAGAAGAAGGCTCGAGAGGAGACGAGTTCTACGTGTCGGTCCGGGAAGAGAGTTTCAGACTATTAAAAGCGCAATAGCTCTGGCTGCACCATTTGATTGCCTTCTACTTCAGCCCGGTGTTTACGACGAACAACATGTTCTGAGTGTGAAATTCCCGATCGAGTTGTGCGGTGAAGGGCAATTGGGAGATGTTCTTTTACAGATTCCAATCGAACAACAGGCGTCGACCACGCGAATTCAAAATGTTATTCTACAGCCTGGCGTTCAGCGGTCACAGAACTCTCTCCCTGTCATTTTGAAGGTTGGAACAGGACATGTTCAACTGGATAACTGTATTGTTGAGCAAGGCCAGATTCAAGTCTCCTCACCTGGCAGTATTGTCATTCGTTACTGTACTTTCAACAATGCTTTTGTCACTCTACGTTCTGTTGGCTATAGCAGAATTGAAAATTGCCAGTTTAGTACAGATGAAACATCTGCTATCATCATAGAAGGCCTTCCACCAATCTCAAGGCCGAGGCCTATTTCCCGACCTGTTGAAGACTGGATGACGTCAAATGGTGTTGACTCACTGGGTCTGAAAGATCTCTATGATCTGTCAGTTGTTGAACCTGATGTGCCTGGTGCAAGGAATGTTGTCAAAACAATGTCTGAAAAAGGAATATCACCATGGGGTAATAAATGTCCTCCTGTGCCTCCTAAACTCACAGACAATCAAATAAAGGGAAAAGATGGCAGTCAAGTGACTGTTTTAACAAACGATCTTAGTCGACCTAGAAGCCCACAAGGTGTTGGCTGTGAATCTCATCCAAGAAGATATTACCTTGATACACAATGCCGTGATATTGTCAGGTCCATACATGGTTGCGTTATAAGAAATAACTGCTTTTGTGTCTGCAAGGGAGCAGTGCTTGTCAGGCGGAGAGGACATGCCTGGATTGAAGGAAATGAAATTGGTCATCTGTCACATGGAGTGAGATGTCTTACAGGAGCCAAGGTTGTGATTCTCAACAACAGAATTCACGACTGTGCAACATCAGGTATATTTTTCAGGGAGAGGTCCACTGGATTGGTTGCTGGAAACCACATTTATGGCAACAAAGAAGCAGGGGCAGACATTCGCAGTGGCTCAGACCCAATATTACAACACAATCAGATCCACAGTGGGAAGCGCTCTGGAGTTGTCATTTTAGATCGTGGCAAAGGAGTCATTAGAGACAATGATATTTATGATAATAAAGAGGCTGGAGTCTACATTCTGTATCGTGGAAATCCCATTGTCAGACACAACAGAATCTGGGCAGGTCGTGCAGCAGGTGTGGCTGTCACAGAAGAAGGAAAGGGCCACATTCTCTACAATGATATCTATGGCATGGAGTGGGGAGGTGTGGACATCCGTAACGGCGGCAATCCTGTTGTGACAAACAACTGGATCAGGGAGGGGCATGCTGACGGCATTGTTATTGGAGAGGGTGGAAAGGGAATCATCATGGACAATGACATACGAGGAAACAGTGGTTGTGGGGTGTGGATCCTTACTGTGTCCAAACCCCTCATCTATGGAAATCGCATTGCCGAGTGTGGAGACAGCGGTGTGGCACTTGTAAGCAACAGTGACCTTCACCATGACAATCAACAACTGAGCTCGCAGTTTGTACAGTCAGAGCAGGAGGAACAGCAAATGCAGCCATTATTCTTTGATGAAGATTTGTCTTCTACCTCAAACTTTGAGGACCACGAGCAGTCAATTGACTTACATGGCCCTCGACCAGACAAGAATTATGCCTGCGTGGATAACAATACAATTTTTGACAATGCAGGTCATGGAATTCACTTTTCTGGCAGTGAAGGTTTACTCATACGTGGTAATAATGTTTACAACAACGAGGGCTGTGGTATCAGTATTGCCAAGCCAGCAGAGATCACAATTCAAGACAACAGTGTATGTAGGAACAACAGCTCTGGAGTCTGTATTGAAATAGGATGTACCGCTAATGTCAGCGGCAATGGTATCTATGGAAACCAAAAGCATGGACTTCTTGTGTGCGGAAAAGGCTTGATTAAAGAAAATGATGTGTTTTGTAATGCATTGAGTGGCATTGAACTGCGCGGGCCAGGTGATCCTTACATTACTCGAAACCGTATCCAATCCACAGATCATTATGGTGTGAATATTCTTGAAAATGCACGTGGATATGTGGACAGCAATGACATCTATCAGTGTAGCACAGAAGGTCTTTATCAACATCCTGACAGCACAGTGTTGGTGATACATAACCGTATAATTCCAGTCAATACCAAAAATAACCGTCAAGTTTGCATTGTCAATCAAGATACCAATGAATGTCAGCATGCCCCAGAGGGACTGGATTTAGATTCACCTCCACGTCCCCTGCAACCAAATAAGGAAAACAAATTAACCAGGCCTGCAATGTCACAATTGTCAATGTCCTCCTCAGGGAATGGTCATATAGTACGTGGAATGGCGACATGTCATGGGCGGAGCCGATTCTGTGTTATTTCTTGA

Transcript

PcrG012992.mRNA1

AGAGATATAGCAGGATCCAAATGGCGGCTGGATTAATGTTGACGCTCAGGTGTTTTTCAAGAAAATGCGGTTGCAGTGACTAATATATCGACAGTTTTTCTTGTTGGAGCACACAAGAAATGCCCGAGAAAGAAGCCTCATTACCGCTAGAATTATGGCGGGTCATTCTGACTCATCTTTCTGTCCGGGATTTGTGTCGTTGTTCTCAAGTTTGTCAGGAATGGAGAGAGCTTGTAAAAAGTCTAGATTCCACCCGATGGAAACAGCTTTTCTTGTCATCGAAGCGTTGGAAACACCCAAACTGGCCAAATTATACTCAGAAAGAGCCTTCTTCGTGGAAAGATACATATAAAGTCCATCATATGGCTTCAAAACAATGGGTGAATCGAAGTGTTGAGGTTAAATGCGCGCCTTGCTTGTATTTGTTTAGAAGAAGGCTCGAGAGGAGACGAGTTCTACGTGTCGGTCCGGGAAGAGAGTTTCAGACTATTAAAAGCGCAATAGCTCTGGCTGCACCATTTGATTGCCTTCTACTTCAGCCCGGTGTTTACGACGAACAACATGTTCTGAGTGTGAAATTCCCGATCGAGTTGTGCGGTGAAGGGCAATTGGGAGATGTTCTTTTACAGATTCCAATCGAACAACAGGCGTCGACCACGCGAATTCAAAATGTTATTCTACAGCCTGGCGTTCAGCGGTCACAGAACTCTCTCCCTGTCATTTTGAAGGTTGGAACAGGACATGTTCAACTGGATAACTGTATTGTTGAGCAAGGCCAGATTCAAGTCTCCTCACCTGGCAGTATTGTCATTCGTTACTGTACTTTCAACAATGCTTTTGTCACTCTACGTTCTGTTGGCTATAGCAGAATTGAAAATTGCCAGTTTAGTACAGATGAAACATCTGCTATCATCATAGAAGGCCTTCCACCAATCTCAAGGCCGAGGCCTATTTCCCGACCTGTTGAAGACTGGATGACGTCAAATGGTGTTGACTCACTGGGTCTGAAAGATCTCTATGATCTGTCAGTTGTTGAACCTGATGTGCCTGGTGCAAGGAATGTTGTCAAAACAATGTCTGAAAAAGGAATATCACCATGGGGTAATAAATGTCCTCCTGTGCCTCCTAAACTCACAGACAATCAAATAAAGGGAAAAGATGGCAGTCAAGTGACTGTTTTAACAAACGATCTTAGTCGACCTAGAAGCCCACAAGGTGTTGGCTGTGAATCTCATCCAAGAAGATATTACCTTGATACACAATGCCGTGATATTGTCAGGTCCATACATGGTTGCGTTATAAGAAATAACTGCTTTTGTGTCTGCAAGGGAGCAGTGCTTGTCAGGCGGAGAGGACATGCCTGGATTGAAGGAAATGAAATTGGTCATCTGTCACATGGAGTGAGATGTCTTACAGGAGCCAAGGTTGTGATTCTCAACAACAGAATTCACGACTGTGCAACATCAGGTATATTTTTCAGGGAGAGGTCCACTGGATTGGTTGCTGGAAACCACATTTATGGCAACAAAGAAGCAGGGGCAGACATTCGCAGTGGCTCAGACCCAATATTACAACACAATCAGATCCACAGTGGGAAGCGCTCTGGAGTTGTCATTTTAGATCGTGGCAAAGGAGTCATTAGAGACAATGATATTTATGATAATAAAGAGGCTGGAGTCTACATTCTGTATCGTGGAAATCCCATTGTCAGACACAACAGAATCTGGGCAGGTCGTGCAGCAGGTGTGGCTGTCACAGAAGAAGGAAAGGGCCACATTCTCTACAATGATATCTATGGCATGGAGTGGGGAGGTGTGGACATCCGTAACGGCGGCAATCCTGTTGTGACAAACAACTGGATCAGGGAGGGGCATGCTGACGGCATTGTTATTGGAGAGGGTGGAAAGGGAATCATCATGGACAATGACATACGAGGAAACAGTGGTTGTGGGGTGTGGATCCTTACTGTGTCCAAACCCCTCATCTATGGAAATCGCATTGCCGAGTGTGGAGACAGCGGTGTGGCACTTGTAAGCAACAGTGACCTTCACCATGACAATCAACAACTGAGCTCGCAGTTTGTACAGTCAGAGCAGGAGGAACAGCAAATGCAGCCATTATTCTTTGATGAAGATTTGTCTTCTACCTCAAACTTTGAGGACCACGAGCAGTCAATTGACTTACATGGCCCTCGACCAGACAAGAATTATGCCTGCGTGGATAACAATACAATTTTTGACAATGCAGGTCATGGAATTCACTTTTCTGGCAGTGAAGGTTTACTCATACGTGGTAATAATGTTTACAACAACGAGGGCTGTGGTATCAGTATTGCCAAGCCAGCAGAGATCACAATTCAAGACAACAGTGTATGTAGGAACAACAGCTCTGGAGTCTGTATTGAAATAGGATGTACCGCTAATGTCAGCGGCAATGGTATCTATGGAAACCAAAAGCATGGACTTCTTGTGTGCGGAAAAGGCTTGATTAAAGAAAATGATGTGTTTTGTAATGCATTGAGTGGCATTGAACTGCGCGGGCCAGGTGATCCTTACATTACTCGAAACCGTATCCAATCCACAGATCATTATGGTGTGAATATTCTTGAAAATGCACGTGGATATGTGGACAGCAATGACATCTATCAGTGTAGCACAGAAGGTCTTTATCAACATCCTGACAGCACAGTGTTGGTGATACATAACCGTATAATTCCAGTCAATACCAAAAATAACCGTCAAGTTTGCATTGTCAATCAAGATACCAATGAATGTCAGCATGCCCCAGAGGGACTGGATTTAGATTCACCTCCACGTCCCCTGCAACCAAATAAGGAAAACAAATTAACCAGGCCTGCAATGTCACAATTGTCAATGTCCTCCTCAGGGAATGGTCATATAGTACGTGGAATGGCGACATGTCATGGGCGGAGCCGATTCTGTGTTATTTCTTGATGAACTTTATGGCATGAACTGTATTTTATTTAATTAGAATTTAATCATAGAGCAGTTTTTCAATTAGGTGCTGTAAGtacagtcgaatctcccataacggacactctcataggcgtacagttctacttgcggccacctagtcaaaaccccgttttattgaactcccatacaaactctgtattttcacattctcgtaagcgtacagctctacttacagccacctagtcaaaaccctgttttattgaactcccatacaaactctgtattttcacattctcgtaagcggtcagctctacttacagccacctagtcaaaaccctgttttattgaactcccatacaaactctgtattttcacaatctcgtaagtggtcagctccagtaatgggcacttttttcgtgccctgggggtgtctgcttaggagtgcttcgtctgtgatcactttttccaaatttatatgacacaaactatccagtaaacaaatcaaaatttgaagcaaacgcatttagctgtggtgaagctcaggaaaggatttgtaagggattcacagctggttttggttttactgttgatgtgtgagtgttttcaaccactcactaagcacagagcagttttcaattgagtgtcgtaaaagcaaaaccaaagtaattactctggccaatcacaagggacacatagagatccactgtccaatcaaaactcgaagcaattacacaaagcactggaaaagttgtgcgagcaagtcacgatttggttttggttttacttacgattggttgagaagtggccctagttcttttagccaatcactaagcgtcgtaatgcaaaaccaaattaagcgcaaattactttcgacgctcaagtaaaaactgctctGGAAAATATGCAAATACAATGCAAACCCACATTACTTTTGTAGCTAAAGACAAAACAAAGTATAAAAAGCCATCACCAAATACGTAGAAACTCATCGTGATCATCTTTGCGACTTTCccattttcttaaagggacactgtcacgatggcagaacttgaaataatcaggctgactttttcaagttcggatctcgagctcctggtggtattcacaatgatagaactttttttcagcttcattacactggcattgtaatttttatcaaaactggaccagtatttgtaggatttcgttgctgtaaactgtgtttttgaaatcttgaattttttaagcgatgctcgtgacagtgtccctttaaataaataTATGTAATGAAAAGATAGAAGCTTCGGTGTGAAAGAAATGTAAACAACATGTTTACTACATGAGAAATTAAAAGATATTGACTGATTTAGTTAGAATAAAGTACAGTACATTTAATTCTGAGTTCTCTGCCAGCGCTAGTTAGTTTTCTTTCGGCTTGTTTTTTATGACTATTTTGCAAATGAGAGTATTGTGTGGAGATTCGGGGGATCGACTAGGGCCAATCCCAATTTTTGAGTTAATAAAAGTCCGATACAGCCAATTTTCAAACCGATAAAGATGTGAAAACATGAAACAAACATAAGTCTTACTCATCATGAACTTCGAGACTTTGCCGGGCGAGAATGCCTATTGCTTCACGCCGTTGAAAATAGACGCAAATCCGTCCTCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646 all species →	F-box	F-box domain	Domain	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10296	FBXO10; F-box protein 10	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.