Gene detail

Detailed information of PcrG013166.mRNA1 in Podabacia crustacea

Genomic Location: ptg000489l:1371880...1379491
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SKP1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03931 all species →	Skp1_POZ	Skp1 family, tetramerisation domain	Domain	Interproscan
PF01466 all species →	Skp1	Skp1 family, dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036296 all species →	Homologous_superfamily	SKP1-like, dimerisation domain superfamily	Interproscan
IPR016897 all species →	Family	S-phase kinase-associated protein 1	Interproscan
IPR001232 all species →	Family	S-phase kinase-associated protein 1-like	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR016073 all species →	Domain	SKP1 component, POZ domain	Interproscan
IPR016072 all species →	Domain	SKP1 component, dimerisation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11165 all species →	SKP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03094	SKP1, CBF3D; S-phase kinase-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.