Gene detail

Detailed information of PcrG013501.mRNA1 in Podabacia crustacea

Genomic Location: ptg000505l:179298...201067
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG013501.mRNA1

CATGAAGAATCTTCGCCAACTTTGTTTGATGAACTACTTTTTACTATGTTCTCTGTCAATTATCTTGATCCAAGGAGCGCCGACTGCCACTAATATTGAACGTGATGGACCCCAGACAGCTGTCTTACTCGCGACTGACGTGAGATGGGAAATAAGGTCTTCATGTTCCTCATCATCAAGATGTAAGCACACTTATCCGATAACAGTAGAGCCAGGCTCCAGCATACCTCCCAACTGTTCGATCATCAGCGCAGGACTGGTAGAAAGCATGACCTGGGAACAAGCGAAGCAAGCAGTTCAAAATAGTACTGGATCAGCAGATTTGGTTTTGCAGAAAGTTTCAACAGATAAAGGAAAATACTCATGTCAATGTGCTGCTATTAAATTCACTCGTGCACTACAAATAGTCTGGGTCACGAGTTCACCCAATTTTATCATTGAGGGAAGACCAATGGATCTGGAATGTTTTTTCTCTGGATGGCCTCTTCCTCGCGAGGTCTTTTGGTACAAGGATGGTAAACAAATCGCTAACGGAACTAGAGGCATGTATTTCTTAGAGGACAAGAAATGGAAGAATGGAGAAGAAACTTTTCACAGCAAACTTAAGCTTCCACCGGGACGTGAGGAGCAGGAAGGTTTTTACAATTGCAGTGCAACAAACAGTTTTCCTGGCTGGTCCAGTAAAGATTCGTTTGCGATTCAAATGCTGTATGAATGTCCATTGCCAAAAGACCCCATAGCTGACTCTCCAGAGATTCCTGCAAGTACCTTTTCCAACGTCAAACTGACATGCTGGATTGATTATGACTGGAACTGTCCTGAATATTTGCACTGGTATCTAAACGACAATCCGAAGCCCTTGCCGGAAAGTGGCGAAAAGTATAAAGTAGAAGTAAAAGACACGCACACCCAATGTACGAAAGAGTTCAACCTCTCCGTTTTTAACGTCACGAAAAATGACGAGGGAACATACAGCTGCCATTGGCTGTGCGAGTATGAAAACACAACGAAAGCTGCCATTCACTTGAAAGTCGTGAATGACACTGAGACAGGAATTTGACTTGCATCATAATCTTGGATTGCACCAGCGAAGTTTTGATCAGAGCCCACATCAGTTTATAAAGTAGCATTCTTTTTAGGAAAAAAGTATTTCATGACTCTATCACCAGTACTGCATGAAAGTTTAAAAGCCGCACGAGCTTTCGGCTCCATGCCGGATTTTTTGTCAATCGGAATCTTTCTACGCGACGGAGTCGAAAGCTTTTAAAAAGTTTTTAACTTTCAAAAGATCCTAATGAAAGAACTTTATATTTAGTTtaaccctttcggtgctgaattttctcaaaaatgctgttaaccgttacatcagatttttggttgttatgactttggattggccttaactttgatcgaaaagtgatttcttacgaaaaaggtagactttcttgaagattaggtacaaaaatgtacaaaattctaatttggtgcgtacgcataagccaagatttggactttttgccggccctttccgatttttttcttgcccttttcctttcctttctctctgcctttttagtttcgttatcttttactcttcatattccttctgtcagctgtaagaaattggtgttaattgtggataagccctgtaaatgggactacactcgactcccgataagtcgaaccttcgggggaaatataaaaaggttcgactaatcggaaatttgagttatcgagggtaaattatatagaaaatgacctgaagggaaatgaaaatttttttcgagttagcgagggttcgagtcatcgggATTCAACTGTGtaatcaattgtaggtgtaatgggccattttccaccaattttgcaccaaaaactgatcagggttttgtagattagttcttgtaaattagctctgtcagaatgtggttgatatccaaaacggacagtcgagcggataggtctatcctagctctattaactgcttatcaaggaagtctggtaacctgcaaattgatgacgtcacaagtggtgcaaTGGCTGCTCCTCCAAATTTGACCCAACTAGGCTTCAGCAATAAAAGGGTTAGGCCCTTACCTTATTCAGGGTTTATAACGCCCACTTTTTATAAGCCAATTGTTATAAGCTCTCACAAGTTTTATGCGTGCCGCATTTTAAATTTTCGACAATGCCAAATTGTAATTGCGTAGTAGAATTCATTAAAATACGCTTTGGAAAAGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686 all species →	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45889 all species →	IG-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for PcrG013501.mRNA1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG013501.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.